Rhizobium rhododendri: PR018_27975
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Entry
PR018_27975 CDS
T08971
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rrho
Rhizobium rhododendri
Pathway
rrho03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rrho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PR018_27975 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrho03400
]
PR018_27975 (ligD)
Enzymes [BR:
rrho01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PR018_27975 (ligD)
DNA repair and recombination proteins [BR:
rrho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PR018_27975 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WFS26520
LinkDB
All DBs
Position
unnamed2:complement(248412..251081)
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AA seq
889 aa
AA seq
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MVGDENLKTYRAKRDFKKTQEPSGETEIAASNRRRFVIQKHDATRLHYDLRLELDGVFKS
WAVTKGPSLDPGDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVLLWDRGYWEPEGSKTP
ERALEDGDFKFSLEGEKLHGSFVLVRMKHDRNGGKRTNWLLIKHHDDHAVDTGGEKILEK
DSSVASGRSLETIAAGKGKAPKPFMLAKSTSSAGAVWDTSEGLAAEERATKEPTRKSAKA
EVKGKAGAKESSSAMPDFIPPQLCDTGARPPSGKGWVHEIKFDGYRIQMRIVGGSVSLKT
RKGLDWTDKFSAIARAAEALPDGIIDGEIAALDSHGAPDFAALQAALSEGKTEDLVFFAF
DLLFDGGEDVREQPLSERKIRLQKILDKAKPDARIRFVEHFDTGGDAVLRSACQLSLEGI
ISKKLDAPYHSGRSASWSKSKCRAGHEVVVGGWATTNGRFRSLLVGVYRGDHFVYVGRVG
TGYGEAKLKTLEPRLEAVKADKSPFTGIGAPRKDASIVWARPELVAEIEFAGWTNDGQVR
QAAFKGLRDDKPASEVEAEKPASPVKVEVPHPEEKVHATRRGAAARASVMGVAISHPDKA
MWPDAGDGEPVTKLDLAQYLEAVGPWMMDHIAGRPCSIIRAPDGIGGEQFFQRHAMQSTS
NLLDLVTVSGDRKPYLEIDRIEGLAAVAQVAALELHPWNCLPKKPEVPGRLVFDLDPGPD
VPFSTVVEAARELRDRLEELGLVSFCKTTGGKGLHVVTPLSEGKTALTWQEAKTFAHDLC
LQTAHDAPDRYVVNMAKKLRNGRIFLDYLRNDRMATAVAPLSTRARPGATVSMPILWSQV
KSDLDPKGFTIRTVPALLKKSSAWEDYNDGARPLAPAVKRLAKSRADAA
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atggtcggcgacgaaaatctcaagacctatcgcgccaagcgagatttcaagaaaacgcag
gagccgagcggcgaaacggagattgctgcctcgaacagaaggcggttcgtcatccaaaag
cacgacgcgacgaggcttcactatgacctgcgcctggaactcgacggcgtcttcaagtcc
tgggcagtcaccaagggtccgtctctcgatcccggcgacaagcgccttgccgtcgaggtc
gaggaccatccgctcgactacggcgacttcgaaggtacaattccgaaaggccagtatggc
ggcggcacggtgctgctgtgggaccgcggatactgggagccggaaggcagcaagaccccg
gaaagagcgcttgaagacggcgatttcaaattcagtctcgagggcgaaaagctgcatggc
agctttgtgcttgtccgcatgaagcacgaccggaacggcggcaagcgaaccaactggctg
ctgatcaagcatcatgacgatcatgccgtggacaccggcggcgagaaaattctcgagaag
gatagctccgtcgcgtccggccgctcgttggaaacgattgccgcaggcaagggaaaggcc
cccaaacctttcatgcttgctaagagcacttcgtccgccggcgctgtctgggacaccagc
gagggactggctgcagaagaacgcgctaccaaagagccaacgcgcaagtcagccaaggcc
gaggtcaagggcaaagccggcgcaaaggaaagcagctcggcaatgccggatttcataccg
ccgcagctttgtgacacgggcgcacggccaccgtccggtaagggctgggtacacgaaatc
aagttcgatggttaccgcatccagatgcggatagtgggcggtagcgtcagcctgaagacc
cgcaagggcctcgactggacggacaagttcagcgcgattgcccgcgccgcagaggctctg
cccgatggcatcatcgacggggaaatcgccgcgctcgacagccatggcgcgccggacttt
gccgccctgcaggcagccctttcagagggaaagactgaggatctcgttttcttcgccttc
gatctgctgttcgatggcggggaggacgtgcgcgaacaacctctttccgagcgcaagatt
cgcctgcagaagatcttggacaaagcaaagcccgatgcccgcatccggtttgtcgagcat
ttcgacaccggtggcgacgcggtgctgcgctccgcctgccagctttcccttgaaggcatc
atctcgaagaagctcgacgctccctaccattccggccgtagcgcctcgtggtcgaagtcg
aaatgccgcgccggccacgaggtggtggtcggcggatgggcaacgaccaacggacggttc
cgttcgctgctggttggcgtctacagaggcgatcatttcgtctatgtcggccgagtaggc
accggatatggcgaggcgaaactcaagacgctcgaaccaagactggaagccgtcaaagct
gacaaatcgccattcaccggcatcggtgccccgcgcaaggatgcgagcattgtctgggca
aggccggagctcgtcgccgagatcgaattcgccggctggacgaatgacgggcaggttcga
caggcggcgttcaagggcctgcgcgacgacaagcccgcatccgaggtcgaggccgaaaag
cctgcatcgcctgtaaaggtagaggtgccgcatccggaagagaaagtccacgcaacccgg
cggggcgcagcagcccgggcgtcggtcatgggcgtggcgatctcccatccagacaaggcc
atgtggcctgacgccggcgacggcgagccggtcaccaagctggatcttgcccagtatctg
gaggcggtcggtccatggatgatggaccacattgccggtcggccgtgctcgataatccgg
gcgcccgacggcatcggcggcgagcagttcttccagaggcatgcaatgcagagcacatcg
aacctgctggatcttgtcaccgtatcaggcgatcgcaagccctatctcgaaatcgaccgc
atcgaaggccttgccgcggtggcgcaagtcgcggcgctcgagctgcatccctggaattgc
ctgccgaaaaaacccgaagtgcccggaagactggtattcgacctcgatcccggccctgac
gtgccattctcgaccgtagtcgaggctgcgcgcgagttgcgcgaccggctcgaggagcta
ggccttgtcagcttctgcaagaccaccggcggcaagggcctgcacgtcgtcacacctctg
tcggaaggcaagacggcgctgacatggcaggaggcgaagacgtttgcccacgacctctgt
cttcagacggcccatgacgcccctgaccgctacgtcgtcaacatggcaaagaagcttcgc
aacggacgcatcttcctcgattacctgcgcaacgaccgcatggcgacggcagtcgccccg
ctttcgacacgcgcgagaccgggcgcgacggtgtcgatgccgatcctttggtcgcaggtc
aagtccgacctcgacccgaaaggcttcacaatccgcaccgtgcccgccctgctgaagaag
agctcggcctgggaagactacaacgacggcgcccgcccactcgccccggcggtaaagcgc
ctcgcaaaatcgcgcgcggacgcggcctga
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