Rickettsia rickettsii Iowa: RrIowa_1085
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Entry
RrIowa_1085 CDS
T00643
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rrj
Rickettsia rickettsii Iowa
Pathway
rrj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rrj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RrIowa_1085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrj03400
]
RrIowa_1085
Enzymes [BR:
rrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RrIowa_1085
DNA repair and recombination proteins [BR:
rrj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RrIowa_1085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
ABY72880
UniProt:
B0BYF4
LinkDB
All DBs
Position
complement(862704..866072)
Genome browser
AA seq
1122 aa
AA seq
DB search
MLQQKFPAAAKSFFAIDNFTKNLKQDFILSASNEEEALQLYKQALFFSSNENIYYFPSYN
TIPYDHTSPNANILSRRAETLIKLTTNNSNSNKLLITHTANLLNKLPPKDFFSKYFLKLS
PKMKFTTDELAMFLVENCFTRNASSIDAGEFAVRGEIIDIILSGPKAYRIHFSWGYIESI
KEFDIDTQISTKSCRELIISPANEIVLNSETIGNFKNNYLRNFGVNHTDNALYKAVISGR
KFTGYEQLLPLFYDSCSNLIDYLNDPIFIFDNLSKQAILEFEHSYNDFYSARSEANKLKF
NSFYPTLSPTSLYFTASEITELLEQNNNILLTFENSEQASLIENIAATSFIEKKTVFDKL
FEVIKANSHKKIIIGSSVLSSFERIKSIIQNYEYKYNEINKLDEAKASIINVAIIPLNQS
FYTKEYLFITASELLEEKPSSTNTNKKLKNILLELDNLAEGEFVVHKDHGIGQFLKLEAL
EIKGKPHDFLKILYAGNDKLYIPVESIEVIKKYGNDNAVLDKLGSVAWQRSKAKLKKRIK
EIALHLIQIAAKRKLNSSASVEFDLEEYDKFCANFPFSETEDQLIAINDIKEDLRNGMLM
DRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGL
NIKQLSSVISSKEAKIIRSELESGKINIIIGTHSLLHKNIKFFNLKLLIIDEEQHFGVGQ
KEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVHTSVMPFDPVII
RDALLREHFRGGRSFYVVPRIKDIEDIAKQLKQIVPELSYKIAYGKMTPSKIDEVMSEFY
AGKFDILVSTTIIESGIDIAEANTMIIHNADMLGLSQLYQLRGRIGRGKMRGYVYLTVAS
HKKMTSHSLRCLEIIQNSCALGSGFTIASRDMDLRGFGNLIGEEQSGQIKEVGTELYQEM
LEEQIAIFKDEPIVSEQPFIPTINLGLSVFIPDNYVADAALKLGLYRRIGNLSNEIEVET
FKDEMIDRFGLLPIEFNNLLDIVKIKLLCFKLNIENLDSGDNGFVIKFYKNADMTDKILK
FVSTYSNQAKIKPDNKLVYIKQLVDKNIIVEANQLLWNLSEM
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgttacaacaaaaatttccggcggctgccaaatctttctttgcaattgataattttact
aagaatcttaagcaagatttcatcttgagtgcgagtaatgaagaggaggcgttgcaatta
tacaagcaagctttatttttttcttctaatgaaaatatttattactttccaagctataat
accatcccttatgaccatacgtcaccaaatgcaaatatcttatctagacgtgcagaaaca
ttaatcaagctaacaacaaataatagtaatagcaacaaattactcatcactcatacagcg
aacttattaaacaaattaccgccgaaagattttttttctaaatattttttgaaattatcc
cctaaaatgaaatttactacggatgagcttgctatgtttctagtagaaaattgttttaca
agaaatgcgagtagcatcgatgctggggaatttgcggttagaggcgaaatcattgatata
atattgtccggtcctaaagcttatagaattcattttagttggggttatattgaatcaatc
aaagaatttgatattgatacgcaaatttcgactaaatcctgcagggagcttattattagt
cctgcaaatgagatagttttaaatagtgaaactataggtaattttaagaataattactta
cgaaattttggagttaatcatactgataatgctttatataaggcggtaatatctggaaga
aaattcacaggatatgaacaattactcccattattttacgattcctgctctaacttaata
gattatttaaacgatcctattttcatattcgataatttgtcaaaacaagccattttagaa
tttgaacatagttataacgatttttattcggcaaggtcagaggcaaataaacttaaattt
aatagtttttatcccaccctttcaccgactagcttatattttaccgcttctgaaataacg
gaattactagaacaaaacaataatatactacttacttttgaaaactcagagcaagctagc
ttaattgaaaatatcgctgctacaagttttatagaaaagaaaacggttttcgataaatta
tttgaggttattaaagcaaattctcataagaaaattattataggctcaagcgttttaagt
agttttgagcgaatcaaaagcataattcaaaattatgaatataaatataatgagataaat
aaattagatgaggctaaggcttcaataataaatgtcgcgataattcctttaaatcaaagc
ttttatacgaaagaatatttatttattaccgctagcgaattattagaagaaaaacctagc
tctacaaacactaacaaaaaacttaaaaatatcttgctggagcttgataatttagctgaa
ggcgaatttgttgttcacaaagatcatggaatagggcagtttttaaagctagaagcttta
gaaatcaaaggcaaaccacatgattttttaaagattttatatgccggcaatgataaatta
tatataccagttgaaagtatagaggtaataaaaaaatacggcaatgataatgcggtgctt
gataagcttggtagcgttgcatggcaaagaagtaaggcaaagcttaaaaagcgtataaaa
gagatagcactgcatttaatacaaatagcagctaaaaggaaacttaatagtagtgcttcc
gttgaatttgaccttgaagaatatgataaattttgtgctaattttcctttcagcgaaacg
gaagaccaattaatcgctataaacgatattaaagaagatctaagaaacggtatgttaatg
gataggttaatatgcggtgatgtcgggtttggtaaaacagaggtagcaatgcgtgccgtc
tttatggtagcaaaatctctaaatgaacatttacctcaagtagcagtagttgtaccgaca
actattttatgtagtcaacatttttcaaggttcatagaaaggttcaaaggttttggttta
aatatcaagcaattatctagcgttattagttctaaagaagcaaaaattataagatcggag
cttgaaagcggtaaaataaatataataataggcactcattctttattacataaaaatata
aaattctttaatttgaaattgttaataatcgatgaagaacaacatttcggtgtcggtcaa
aaagaatttcttaaatcgctaaaatcctcttcccatgtacttgcaatgtcggcaacaccg
attcctcgaacgctgcaaatgtcaatgaccggtttaaaagaacttagcattattgcaacg
ccgcctctaaacaggctggaagttcatacctcggttatgccgtttgatcccgttattatc
agagatgcattattacgcgaacattttagaggcggaagaagtttttatgtagttccaaga
attaaagatatagaggatatcgcaaaacaattaaaacaaatcgtgccggaattaagctat
aaaatagcttacggaaaaatgactccgagtaaaattgatgaggttatgagcgagttttat
gccggcaaattcgatatactagtctcaactactattatagaatcaggaattgatatagcc
gaggcaaataccatgatcatacataatgctgatatgctgggtcttagtcagctatatcaa
ttgcgtggtcgaataggtcgaggtaaaatgcggggttatgtctatctaacggtagcaagt
cataaaaagatgacatcgcactccttaagatgcttagagataatacaaaatagttgtgct
ttgggctcaggttttactattgcaagccgtgatatggatttacgaggtttcggtaatttg
ataggtgaagaacaatcaggacaaattaaagaagtaggtacagaactatatcaagaaatg
ctggaagaacaaatagctatttttaaagatgaaccgattgtttcagaacaaccctttatc
ccgactattaatttgggattatccgtctttattccagataattatgtagcagatgcagct
cttaaacttggactatatagaagaataggtaatttaagtaatgagatagaagtagagaca
tttaaagatgagatgattgatagattcggtttactaccgattgaatttaataatttactt
gatattgtaaaaataaaactattatgctttaagttaaatattgaaaatctagattcagga
gataacggatttgtgattaaattttataaaaatgccgatatgactgataaaattttaaaa
ttcgttagtacttactctaatcaggcaaaaatcaaaccagataataaattagtatatatc
aagcaattagtagataaaaatataattgttgaggcaaatcaactactttggaatttatcg
gagatgtag
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