Roseburia rectibacter: H8S51_003410
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Entry
H8S51_003410 CDS
T09206
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rrk
Roseburia rectibacter
Pathway
rrk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rrk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H8S51_003410 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrk03400
]
H8S51_003410 (mfd)
Enzymes [BR:
rrk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H8S51_003410 (mfd)
DNA repair and recombination proteins [BR:
rrk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H8S51_003410 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
RecG_dom3_C
IstB_IS21
DUF3136
Motif
Other DBs
NCBI-ProteinID:
UMZ00792
LinkDB
All DBs
Position
714824..718354
Genome browser
AA seq
1176 aa
AA seq
DB search
MRAFSEPLKELKEFENLSAIVQKLRGIAQISGCIDAAKPHLMYSVNNGSGNRIIVTFQEQ
RAKEIYEEYRFFDPKAAYYPAKDILFYQSDIRGNVLTAERINALKMLAEEPACTIITTFD
GLMNPMPVPENFIQSVIKVAVGDTLNLEELVKHLVELGYEKNYQAETMGEFSVRGGILDI
FPLTEDNPFRIEFWGDEVDSIRSFDAESQRSIENLEEISIYPACELVLTVQERQAGIGRI
LKEADKVSAKLRKEMKTEEAHRIKSTAAQIAEEAGELGISAGLDAYLSYFCEERVSLLDY
FNRENTIIFVDELARSIERGMVTETEFSESMKQRLEKGYILPGQMRELFSCKEILAKIET
MACISLVALDLKNSHVDIKEKFTINSKTVNPYNNSFELLVKDLTRYKKNGYRVILLSGSR
TRAKRLAEDLMAEELNAFYSEDFDHEVKPGEIMTGYGKIKKGYEYPLLKFVVISESDIFG
SEKKKKKHRRTYEGEKIASFTDLNVGDYVVHENHGLGIYRGIEKIEVDKTVKDYIKIEYA
GGGNLYILATQLELIQKYAGADAKKPKLNKLGGQEWNKTKTKVRGAVKEIAQDLVKLYAM
RQDQDGFVYGPDTVWQREFEEMFPFEETEDQELAIEATKKDMESTKIMDRLICGDVGYGK
TEIAIRAAFKAVQDGKQVAFLVPTTILAQQHYNNFVQRMKDFPVNIDLLCRFRSSAEQKK
TVEALKKGSVDIIIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQLKTNIDVLTL
TATPIPRTLHMSLIGIRDMSVLEEPPMDRVPIQTYVMEYNEELVREAISRELSRGGQAYY
VYNRVKEIADVAAKIAELVPEANVAYAHGQMKETELENIMYRFINGEIDVLVSTTIIETG
LDISNVNTMIIHDADNMGLSQLYQLRGRVGRSNRTAYAFLMYRRDKMLKEVAEKRLAAIK
EYTELGSGFKIAMRDLEIRGAGNLLGAKQHGHMEAVGYDLYCKMLNEAVKEAKGMEVAES
FDTSIDIDIDAYIPMGYIPNEMQKLDIYKRIAGIETADESEEMLEELIDRFGDPPKSVEN
LLYIARVKSMAHHLYFTDISQKGDALRFTLYEKAKINVAAIPEFTASFNNHVKFTMDAKE
PYFTYFLKLNTREKYVEAKDVMEIFLKRAGEMLMEK
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagagctttttcggaacctttaaaagagctgaaagaatttgaaaatttaagtgcgata
gtgcagaagctgcgcgggatcgcgcagatctcaggatgtatagatgcggcaaaaccacat
cttatgtacagtgtaaacaatggttctggaaacaggatcattgttacgtttcaggagcag
agagcgaaagaaatctatgaagaatatcggttctttgatccgaaggcagcgtattatcct
gcaaaagatatccttttttatcagtcggatatccgtggaaatgtacttactgcagagcgt
atcaatgcattaaaaatgcttgcagaagaaccggcgtgcaccataataactacatttgac
ggacttatgaatccaatgccagtaccggaaaattttattcagtccgtgataaaggttgcg
gtcggggatacattaaatctcgaagaactggtaaaacacttagtggagcttggttacgaa
aaaaactatcaggcagaaacgatgggagagttttcggtgcgtggcggaattttagatata
tttccactgacagaagataatccgtttcgaattgaattctggggggacgaggttgactct
atccgttcctttgatgcggaaagccagcgatcgattgaaaatctggaggaaatttcaatt
tatcctgcctgtgaactggtactgacagtacaggaacggcaggcggggatcggaaggatc
ttaaaagaggctgataaggtatctgcaaaactccggaaagaaatgaaaacggaggaggca
caccgcataaaaagtactgctgcccagattgcagaggaagcgggagagttaggtatcagt
gcaggacttgacgcgtatctgtcgtatttttgtgaggaaagagtatcgttacttgattac
tttaacagggagaatacgattatttttgtggatgagctggcacgttccattgagcgcggc
atggtgacggaaacggagttttccgagagcatgaaacagcgtcttgaaaaaggttatatt
ctgcctggacagatgcgggaacttttttcctgtaaggaaatcctggcaaaaattgaaaca
atggcatgtatttctttggtggcactggatttaaaaaacagtcatgtggatatcaaagaa
aaatttaccatcaactcaaagacggtcaatccatataataacagttttgaacttctggtc
aaagatctcacccgttacaaaaaaaacggataccgtgtgattttgctttccggatcaaga
acgcgtgcgaagcggctggcagaagatctgatggcagaggaactgaatgctttttattca
gaagacttcgaccatgaggtaaaaccgggtgagatcatgaccggttacggtaagatcaaa
aaaggttatgaatatccgttactcaaatttgttgtgatctcagagagcgatattttcggc
agtgaaaagaaaaaaaagaaacaccgccgcacctatgagggagaaaaaattgcaagtttt
accgaccttaacgttggtgactatgttgttcatgaaaatcatggactcggaatctaccgc
ggaatcgaaaagatcgaagttgataagacggttaaagattatatcaaaattgagtatgcc
ggcggtggaaacttatatatccttgcaacacagttagaactgatccagaaatatgccggt
gcagatgcgaaaaaaccaaagctgaataaattaggcggacaggaatggaataagaccaag
acgaaggtgcgcggtgcagtaaaagagattgcacaggatcttgtgaaactttacgcaatg
agacaggatcaggatggatttgtctatggaccggatactgtctggcagagagaatttgag
gaaatgttcccgtttgaagagacggaagatcaggagcttgcgatcgaggcgacgaaaaaa
gatatggaaagcacgaagatcatggatcgcctgatctgtggtgatgtcgggtatggaaag
acggaaattgcgatacgtgcggcttttaaggcagtgcaggacggaaaacaggttgctttt
ttagtgccgacgacgattttagcgcagcagcattacaataactttgtgcagcgtatgaaa
gattttccggtcaatattgatcttttgtgtcgtttccggagcagtgcagaacagaaaaag
acagtggaggcattgaaaaaaggaagcgttgatatcattatcgggacacacagactgctg
tcgaaagatgtggtatataaggatcttggacttttgattattgatgaggaacagcgtttt
ggtgtgacgcacaaagaaaagatcaaacagttaaagacaaatatcgatgtgctcacgctc
acagcaacaccgattccaaggacgcttcatatgagtctgatcggaatccgtgatatgagt
gtattagaggaaccgccgatggaccgtgtaccgatccagacgtatgtaatggaatacaat
gaggaactggtacgcgaagcaatctcaagagagctttcccgtgggggacaggcatattat
gtatacaaccgtgtgaaagagattgcagatgtggcagctaaaattgcagagcttgtgccg
gaggcaaatgttgcctatgcgcatggacagatgaaagagacagaattagaaaatatcatg
tatcgttttattaatggtgagattgatgtactggtctccacaacgatcattgagacagga
ctggatatttcaaatgtgaataccatgatcatccatgatgcggataacatgggattgtca
cagctttatcagcttcgtggacgtgtcggcagatcgaaccggacagcatatgcgttttta
atgtaccgcagggataagatgttaaaagaggtagcagaaaaaaggctggctgcgatcaaa
gagtatacggagcttggaagcggttttaagatcgccatgcgggatttagagatccgcggt
gcgggaaatctgcttggtgccaagcagcatgggcatatggaggcagtcggatacgatctt
tactgtaaaatgttaaatgaagcggttaaggaagcaaaaggcatggaagttgctgaaagt
tttgacacttcgatcgacattgatattgatgcttatattccgatgggatatattccgaac
gagatgcagaaacttgacatttataagcgtattgcaggcattgagactgcggatgagtca
gaagagatgttagaagaactgatcgaccgttttggagatccgccaaaatctgtcgaaaat
ctgctttatattgcaagggtaaaatccatggcacatcatctttatttcacggatatttca
cagaaaggtgatgcactgcggtttaccctgtatgagaaagcaaagatcaatgtggcggca
attccggagtttacagcatcctttaacaatcatgtgaagtttaccatggatgcgaaagaa
ccgtattttacttatttcctgaaactgaataccagggaaaaatatgtggaagcaaaagat
gtgatggagatatttttaaagcgtgcgggagagatgctgatggaaaaataa
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