Rickettsia rickettsii Hino: RPJ_01015
Help
Entry
RPJ_01015 CDS
T01738
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rrn
Rickettsia rickettsii Hino
Pathway
rrn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rrn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RPJ_01015 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rrn03021
]
RPJ_01015 (rpoB)
03400 DNA repair and recombination proteins [BR:
rrn03400
]
RPJ_01015 (rpoB)
Enzymes [BR:
rrn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RPJ_01015 (rpoB)
Transcription machinery [BR:
rrn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RPJ_01015 (rpoB)
DNA repair and recombination proteins [BR:
rrn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RPJ_01015 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
AFB27155
LinkDB
All DBs
Position
181698..185819
Genome browser
AA seq
1373 aa
AA seq
DB search
MVSLRDNIEAQPLSHNRRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNK
GLQSILNSIFPISDSSNVANLEFVKYEFDTPKYDVEECSQRSLSYAAPLKVTLRLSIWDI
DEDTGTREIKGIKEQEVYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVH
SSGKLLYSARVIPYRGSWLDLEFDAKDVIYFRIDRKRKLYATTLLRAIGMSTEEIIKFYY
NSVTYKLVKNKGWAVKFIPQHITAHRLTSDLVDADTGNILLKAGQKITPRLAKKYFGEGL
NNILVAHETLIGKYLSEDLRDPASDEVLAKIGEMITADMLNVINDLKIKNVNVLVINPQS
GPYIRNTLFADKNQDREAALCDIFRVLRPGEPANIEAAESLFYNLFFDTERYDLSEVGRI
KMNSRLELNISEEVTVLTIDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQ
FRIGLVRMEKSVIERMSAGDVDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSE
ITHKRRLSALGPGGLSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINK
HGFIESPYRRVKDGCVTDEVVYLSAIEEGKYKIGQANSKINKDGKLQGEFINCRVEGGNF
VMVEPYEVDFIDVTPMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGT
GVEGVVAKDSGASVLALHDGIVEQVDSNRIVIRTLEQKVDGSPSVDIYNLLKFQKSNHNT
CINQKPLVKVGHYVKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIV
KEDVFTSIHIEEFEVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYIGAEVKAGDIL
VGKVTPKSESPITPEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRVFSRRGVEKDQ
RAIAIEKQQIEKFAKDRDDELEIIEHFVFSWLEKLLVGQVIINGPKQVKVGQTITTEMLK
GLSKGQFWQITVEDANVMNEIEQIKTHYDEKKEALDKRFATKVEKLQSGDDLPQGALKVV
KVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIG
QILETHLGWASINLAKKISTLVKEYKNKHIGIEQIKKFLIELYGENINSILERPEEEIIA
FCKKVSKGVHFATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVGQKY
LLKLHHLVDNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEML
TVKSDDVNGRIKTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLEVTSS
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atggtttcattaagggataatatagaagcacaacccttgtcacataatagaagaataaga
aaaaatttcggtcacataaatttagtagcagatataccgaatttgattgaaattcaaaaa
aattcatatgagaaaaactttctacagttaaatattaaagattctgaaagaaaaaacaaa
ggtttacaatctatattaaattcaatttttcctatttcagattcctccaatgttgctaat
ttagaatttgtaaaatatgaattcgatactccaaaatatgatgtagaagagtgcagtcaa
agaagtttaagttatgctgctcctcttaaagttactttaagattaagtatttgggatata
gatgaggataccggtactagagaaattaaagggattaaagagcaagaagtatatatgggt
gatatcccattaatgactaaaaacggtacttttattatcaacggtacggaaagagtagtt
gtatcacaaatgcatcgctcacctggtgtattcttttatcatgatgaaggaaaagtccac
tcttccggcaaacttttatattctgctcgtgttattccatatagagggtcttggcttgat
ttagaattcgacgctaaggatgttatttatttcaggattgatagaaaaagaaagctttat
gctactactttgcttagagctataggtatgagtactgaagaaattataaaattttattat
aattcagtaacttataagcttgttaaaaataaaggttgggcggttaaatttatacctcag
catattactgctcatcgtttaacaagtgatttagtagatgcagatactggaaatattcta
ctgaaagcaggacaaaaaattactccgcgtttggctaaaaaatattttggggaagggctt
aataatattttagtagctcatgaaactttaatcggcaaatatctatccgaagatttaaga
gatcctgcaagcgatgaagtattagcaaaaatcggtgaaatgattactgctgatatgcta
aatgttattaatgatcttaaaattaaaaatgttaacgtattagtaatcaatcctcaatcc
ggtccatatataaggaacaccttatttgctgataaaaatcaggatcgtgaggcagcatta
tgtgatattttcagagttctaagaccaggcgaacctgctaatatcgaagcggctgaaagc
ctgttttataatttattctttgatacggaaagatatgatctttcagaagtcgggcgaata
aaaatgaattctaggttagagctgaatatttctgaagaagttacggttttaacaattgat
gatattaaaaatatcgtaagagttttagtagagcttaaagacggtaaaggtatcatagat
gatattgatcatttaggtaatagaagggttagatcagtaggtgaattgatagaaaatcaa
tttagaataggtttagtccgaatggaaaaatctgtaattgaaaggatgtcggcaggtgat
gttgataccgtaatgcctcatgatttagtaaattctaaaattttagtttcagtagtaaaa
gaattttttagtacctcccaattatcccaatttatggatcaaacaaatccattatcggaa
ataactcataaaagaaggctatcggcacttggtcccggggggcttagtcgagatcgagca
ggttttgaggtgcgtgacgtacatccgactcattacggtcgtatttgtcctattgaaaca
cctgaaggtcagaatatcgggttaattaactctatggctacttatgctagaataaataaa
catggttttatagagagtccgtatagaagagttaaagatggatgtgtaaccgatgaagtg
gtatatctttctgctattgaagaaggtaaatacaaaatcggacaagcaaattctaaaatt
aataaagacggaaaactgcaaggagagtttattaattgccgtgttgaaggcggtaatttt
gtaatggtagaaccgtatgaggtagacttcattgatgtgactcctatgcaggtagtgtcg
gttgcggcttctcttatacctttcttagaaaacgatgatgctaaccgtgctttgatgggt
tcaaacatgcaaagacaagccgttcctttaattaaaacggatgcaccttttgtaggtacc
ggagttgaaggggtagtagctaaagattccggagcgtcagtgcttgcattacatgacggt
attgttgagcaggtagattcaaatagaatcgtgattagaactctagaacaaaaagttgac
ggttctccttcggttgatatttataacttactaaaattccaaaaatccaatcataatact
tgtataaatcaaaagcctttagttaaggtcggtcattacgttaagaaaaacgatattata
gctgacggtcctagtacggataacggtgaaattgctttaggtcgaaacgtgcttgtggct
ttcttaccttggaacggttataattttgaagattccattttaatatccgaacgtatagta
aaagaggatgtatttacatctattcatattgaagagtttgaagtaatagctagagataca
cgccttggtcctgaagaaattacccgtgatataccgaatgtaagtgaagaagcgttgcgt
catcttgatgaggtcggaataatttatataggtgcagaagtaaaagccggtgatatttta
gttggaaaagtaacaccaaaaagtgaatcgcctattactcctgaagagaagctactacgt
gctattttcggggaaaaagcttttgacgtaaaagattcatcgctgcatgtaccttccgga
gtgagcggaactgtagtagaagtaagggtattttctcgtagaggtgtagaaaaagaccag
cgagctattgctattgaaaaacaacaaattgaaaaattcgcaaaagacagagacgatgaa
ttagaaattattgagcattttgtgtttagttggcttgaaaagcttttagtagggcaggtg
attattaacggtcctaagcaagtaaaagtaggacaaactattactactgaaatgctaaaa
ggcttatctaaagggcaattttggcagattaccgtggaagatgcaaatgtaatgaatgaa
atagagcagataaagactcattatgatgagaaaaaagaggctcttgataaaagatttgct
actaaggtagagaaattgcaaagtggtgatgatttacctcagggagctttaaaagtagta
aaagtatttattgcaactaagcataaattacaacccggggataaaatggcaggaagacac
ggaaataaaggtgttatttcacgtatcgtacctgaagaagatatgccgtttttagaagat
ggaactgttgtagatatcgttcttaaccctctaggtcttccgtcccgtatgaatatagga
cagattttagaaacgcatcttgggtgggcatcaataaatttagcaaaaaaaatatctacc
ttagtaaaggaatataaaaataaacatataggtattgagcagattaagaaattcttaatt
gaactgtatggagaaaatattaattctatacttgaaagaccggaagaagagattatcgct
ttttgtaagaaagtaagtaaaggcgtacattttgcaactcctgtatttgacggagcaaaa
gttcaggacgttaaagatatgctaaagcttgccggtcaagacccttcaggacaagtgaaa
ttaattgacggtagaaccggtgaatattttgaccgtctagtaaccgtaggacagaaatat
ttgctgaaattgcatcatttagtcgataataaaattcactcccgttctataggaccttat
agtttagtaacgcagcaaccgcttggaggtaagtctcatttcggcggacagcgtttcgga
gaaatggaatgctgggcattacaagcttacggtgcagcttatacgttacaggaaatgtta
acggttaagtcggatgacgtaaacggtaggatcaaaacttatgattctatagtacgtggt
gaaaataattttgaatcaggcattcctgaatcatttaatgttatgataaaagaatttaga
tctttatgtcttaacgtaaagcttgaagtaacttcaagttaa
DBGET
integrated database retrieval system
