Rhinopithecus roxellana (golden snub-nosed monkey): 104680634
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Entry
104680634 CDS
T03989
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
rro
Rhinopithecus roxellana (golden snub-nosed monkey)
Pathway
rro03013
Nucleocytoplasmic transport
rro03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rro00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104680634 (UPF1)
03015 mRNA surveillance pathway
104680634 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rro03019
]
104680634 (UPF1)
Enzymes [BR:
rro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104680634 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104680634 (UPF1)
Messenger RNA biogenesis [BR:
rro03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104680634 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104680634 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104680634
NCBI-ProteinID:
XP_030791913
LinkDB
All DBs
Position
8:18297943..18336404
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AA seq
1137 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
GPGGAGAGAAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPI
HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV
LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLS
WLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAY
QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVII
WLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNANLTQHTDYGDEIAIELRSSVGA
PVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPK
RFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA
PSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLK
DETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQA
TEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQ
YRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSG
TSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEV
EIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSK
QPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAI
IPGSVYDRSSQGRPSSMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQA
NGPAAGRGTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISM
SQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctctcagactctcactttcctggacacggaggag
gccgagctgctcggcgctgatacacagggctccgagttcgaattcaccgactttactctt
cctagccagacgcagacgccccccggcggccccggcggcccgggcggtggcggcgcggga
ggcccaggcggcgcgggcgcgggcgccgcggcgggacagctcgacgcgcaggttgggccc
gaaggcatcctgcagaatggggctgtggacgacagtgtagccaagacgagccagttgttg
gccgagttgaacttcgaggaagatgaagaagacacctattacacgaaggatctccccata
cacgcctgcagttactgtggaatacacgatcctgcctgcgtggtttactgtaataccagc
aagaagtggttctgcaacggacgtggaaatacttctggcagccatattgtaaatcacctt
gtgagggcaaaatgcaaagaggtgaccctgcacaaggacgggcccctgggggagacagtc
ctggagtgctacaattgcggctgtcgcaatgtcttcctcctcggcttcatcccagccaaa
gctgactcagtggtggtgctgctgtgcaggcagccctgtgccagccagagcagcctcaag
gacatcaactgggacagctcgcagtggcagccactgatccaggaccgctgcttcctgtcc
tggctggtcaagatcccctccgagcaggagcagctgcgggcgcgccagatcacggcacag
cagatcaacaagctggaggagctatggaaggaaaacccttctgccacgctggaggacctg
gagaagccgggggtggacgaggaaccgcagcacgtcctcctgcggtatgaggacgcctac
cagtaccagaacatattcgggcccctggtcaagctggaggctgactacgacaagaagctg
aaggagtctcagactcaagataacatcacggtcaggtgggacctgggccttaacaagaag
agaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatt
tggttaagagacatgcggctcatgcagggggatgagatatgcctgcggtacaaaggggac
cttgcgcccctgtggaaagggatcggccacgtcatcaaggtccctgataatgcaaactta
actcagcacacagattatggcgatgagatcgccattgagctgcggagcagcgtgggtgca
cccgtggaggtgactcacaacttccaggtggattttgtgtggaagtcgacctcttttgac
aggatgcagagtgcgttgaaaacgtttgctgtggacgagacctcagtgtccggctacatc
taccacaagctgctgggccatgaggtggaggacgtaatcatcaagtgccagctgcccaag
cgcttcacagcgcagggcctccccgaccttaaccactcccaggtttatgccgtgaagact
gtgctgcaaagaccgctgagcctgatccagggcccgccaggcacggggaagacagtgacg
tcagccaccatcgtctaccacttggcccggcaaggcaacgggccggtgctggtgtgtgct
ccgagcaacatcgccgtggaccagctaacagagaagatccaccagacggggctgaaggtc
gtgcgcctctgcgccaagagccgcgaggccatcgactccccggtgtctttcctggccctg
cacaaccagatcagaaacatggacagcatgcctgagctgcagaagctgcagcagctgaaa
gatgagactggggagctgtcgtctgccgatgagaagcggtaccgggccttgaagcgtacc
gcggagagagagctgctgatgaacgcagatgtcatctgctgcacgtgtgtgggcgccggc
gacccgagactggccaagatgcagttccgctctattttaatcgacgaaagcacccaggcc
accgagccagagtgcatggttcccgtggtcctcggggccaagcagctgatccttgtaggt
gaccactgccaactgggcccagtggtgatgtgcaagaaggcggcgaaagccgggctgtcg
cagtcgctcttcgagcgcctggtggtgctgggcatccggcccatccgcctgcaggtccag
taccgcatgcaccctgcactcagcgccttcccatccaacatcttctacgaaggctccctc
cagaatggtgtcactgcagcggatcgtgtgaagaagggatttgacttccagtggccccaa
cccgataaaccgatgttcttctacgtgacccagggccaagaggagatagccagctcgggc
acctcctacctgaacaggaccgaggctgcgaacgtggagaagatcaccacgaagttgctg
aaggcgggcgccaaaccggaccagattggcatcatcacgccctacgagggccagcgctcc
tacctggttcagtacatgcagttcagcggctccctgcacaccaagctctaccaggaggtg
gagatcgccagtgtggacgcctttcagggacgcgagaaggacttcatcatcctctcctgt
gtgcgggccaacgagcaccaaggcattgggtttttaaatgaccccaggcgtctgaacgtg
gccctgaccagagcaaggtacggcgtcatcatcgtgggcaacccgaaggcgctgtcgaag
cagccactctggaaccacctgctgaactactacaaggagcagaaggtgctggtggagggg
ccgctcaacaacctgcgcgagagcctcatgcagttcagcaagccgcgcaagctggtcaac
accatcaacccgggagcccgcttcatgaccacagccatgtatgatgcccgggaggccatc
atcccaggctccgtctatgatcggagcagccagggccggccctccagcatgtacttccag
acccatgaccagattggcatgatcagtgccggccccagccatgtggctgccatgaacatt
cccatccccttcaacctggtcatgccgcccatgccaccgcctggctattttggacaagcc
aatgggcccgctgcaggccgaggcaccccaaaaggcaagactggccgtgggggacgccag
aagaaccgctttgggcttcctgggcccagccagaccaacctccccaacagccaagccagc
caggatgtggcgtcacagcccttctctcagggcgccctgacgcagggctacatctccatg
agccagccctcccagatgagccagcccggcctctcccagccggagctgtcccaggacagt
taccttggggacgagtttaaatcacaaatcgacgtggcgctctcgcaggactccacgtac
cagggagagagggcgtaccagcatggcggggtgacggggctgtcccagtactaa
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