Rickettsia rickettsii Hlp#2: RPK_05000
Help
Entry
RPK_05000 CDS
T01739
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rrp
Rickettsia rickettsii Hlp#2
Pathway
rrp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rrp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RPK_05000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrp03400
]
RPK_05000
Enzymes [BR:
rrp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RPK_05000
DNA repair and recombination proteins [BR:
rrp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RPK_05000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AFB29199
LinkDB
All DBs
Position
complement(863444..866812)
Genome browser
AA seq
1122 aa
AA seq
DB search
MLQQKFPAAAKSFFAIDNFTKNLKQDFILSASNEEEALQLYKQALFFSSNENIYYFPSYN
TIPYDHTSPNANILSRRAETLIKLTTNNSNSNKLLITHTANLLNKLPPKDFFSKYFLKLS
PKMKFTTDELAMFLVENCFTRNASSIDAGEFAVRGEIIDIILSGPKAYRIHFSWGYIESI
KEFDIDTQISTKSCRELIISPANEIVLNSETIGNFKNNYLRNFGVNHTDNALYEAVISGR
KFTGYEQLLPLFYDSCSNLIDYLNDPIFIFDNLSKQAILEFEHSYNDFYSARSKANKLKF
NSFYPTLSPTSLYFTASEITELLEQKNNILLTFENSEQASLIENIAATSFIEKKTVFDKL
FEVIKANSHKKIIIGSSVLSSFERIKSIIQNYEYKYNEINKLDEAKASIINVAIIPLNQS
FYTKEYLFITASELLEEKPSSTNTNKKLKNILLELDNLAEGEFVVHKDHGIGQFLKLEAL
EIKGKPHDFLKILYAGNDKLYIPVESIEVIKKYGNDNAGLDKLGSVAWQRSKAKLKKRIK
EIALHLIQIAAKRKLNSSASVEFDLEEYDKFCANFPFSETEDQLIAINDIKEDLRNGMLM
DRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGL
NIKQLSSVISSKEAKIIRSELESGKINIIIGTHSLLHKNIKFFNLKLLIIDEEQHFGVGQ
KEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVHTSVMPFDPVII
RDALLREHFRGGRSFYVVPRIKDIEDIAKQLKQIVPELSYKIAYGKMTPSKIDEVMSEFY
AGKFDILVSTTIIESGIDIAEANTMIIHNADMLGLSQLYQLRGRIGRGKMRGYVYLTVAS
HKKMTSHSLRCLEIIQNSCALGSGFTIASRDMDLRGFGNLIGEEQSGQIKEVGTELYQEM
LEEQIAIFKDEPIVSEQPFIPTINLGLSVFIPDNYVADAALKLGLYRRIGNLSNEIEVET
FKDEMIDRFGLLPIEFNNLLDIVKIKLLCFKLNIENLDSGDNGFVIKFYKNADMTDKILK
FVSTYSNQAKIKPDNKLVYIKQLVDKNIIVEANQLLWNLSEM
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgttacaacaaaaatttccggcggctgccaaatctttctttgcaattgataattttact
aagaatcttaagcaagatttcatcttgagtgcgagtaatgaagaggaggcgttgcaatta
tacaagcaagctttatttttttcttctaatgaaaatatttattactttccaagctataat
accatcccttatgaccatacgtcaccaaatgcaaatatcttatctagacgtgcagaaaca
ttaatcaagctaacaacaaataatagtaatagcaacaaattactcatcactcatacagcg
aacttattaaacaaattaccgccgaaagattttttttctaaatattttttgaaattatcc
cctaaaatgaaatttactacggatgagcttgctatgtttctagtagaaaattgttttaca
agaaatgcgagtagcatcgatgctggggaatttgcggttagaggcgaaatcattgatata
atattgtccggtcctaaagcttatagaattcattttagctggggttatattgaatcaatc
aaagaatttgatattgatacgcaaatttcgactaaatcctgcagggagcttattattagt
cctgcaaatgagatagttttaaatagtgaaactataggtaattttaagaataattactta
cgaaattttggagttaatcatactgataatgctttatatgaggcggtaatatctggaaga
aaattcacaggatatgaacaattactcccattattttacgattcctgctctaacttaata
gattatttaaacgatcctattttcatattcgataatttgtcaaaacaagccattttagaa
tttgaacatagttataacgatttttattcggcaaggtcaaaggcaaataaacttaaattt
aatagtttctatcccaccctttcaccgactagcttatattttaccgcttctgaaataacg
gaattactagaacaaaaaaataatatactacttacttttgaaaactcagagcaagctagc
ttaattgaaaatatcgctgctacaagttttatagaaaagaaaacggttttcgataaatta
tttgaggttattaaagcaaattctcataagaaaattattataggctcaagcgttttaagt
agttttgagcgaatcaaaagcataattcaaaattatgaatataaatataatgagataaat
aaattagatgaggctaaggcttcaataataaatgtcgcgataattcctttaaatcaaagc
ttttatacgaaagaatatttatttattaccgctagcgaattattagaagaaaaacctagc
tctacaaacactaacaaaaaacttaaaaatatcttgctggagcttgataatttagctgaa
ggcgaatttgttgttcacaaagatcatggaatagggcagtttttaaagctagaagcttta
gaaatcaaaggcaaaccacatgattttttaaagattttatatgccggcaatgataaatta
tatataccagttgaaagtatagaggtaataaaaaaatacggcaatgataatgcggggctt
gataagcttggtagcgttgcatggcaaagaagtaaggcaaagcttaaaaagcgtataaaa
gagatagcactgcatttaatacaaatagcagctaaaaggaaacttaatagtagtgcttcc
gttgaatttgaccttgaagaatatgataaattttgtgctaattttcctttcagcgaaacg
gaagaccaattaatcgctataaacgatattaaagaagatctaagaaacggtatgttaatg
gataggttaatatgcggtgatgtcgggtttggtaaaacagaggtagcaatgcgtgccgtc
tttatggtagcaaaatctctaaatgaacatttacctcaagtagccgtagttgtaccgaca
actattttatgtagtcaacatttttcaaggttcatagaaaggttcaaaggttttggttta
aatatcaagcaattatctagcgttattagttctaaagaagcaaaaattataagatcggag
cttgaaagcggtaaaataaatataataataggcactcattctttattacataaaaatata
aaattctttaatttgaaattgttaataatcgatgaagaacaacatttcggtgtcggtcaa
aaagaatttcttaaatcgctaaaatcctcttcccatgtacttgcaatgtcggcaacaccg
attcctcgaacgctgcaaatgtcaatgaccggtttaaaagaacttagcattattgcaacg
ccgcctctaaacaggctggaagttcatacctcggttatgccgtttgatcccgttattatc
agagatgcattattacgcgaacattttagaggcggaagaagtttttatgtagttccaaga
attaaagatatagaggatatcgcaaaacaattaaaacaaatcgtgccggaattaagctat
aaaatagcttacggaaaaatgactccgagtaaaattgatgaggttatgagcgagttttat
gccggcaaattcgatatactagtctcaactactattatagaatcaggaattgatatagcc
gaggcaaataccatgatcatacataatgctgatatgctgggtcttagtcagctatatcaa
ttgcgtggtcgaataggtcgaggtaaaatgcggggttatgtctatctaacggtagcaagt
cataaaaagatgacatcgcactccttaagatgcttagagataatacaaaatagttgtgct
ttgggctcaggttttactattgcaagccgtgatatggatttacgaggtttcggtaatttg
ataggtgaagaacaatcaggacaaattaaagaagtaggtacagaactatatcaagaaatg
ctggaagaacaaatagctatttttaaagatgaaccgattgtttcagaacaaccctttatc
ccgactattaatttgggattatccgtctttattccagataattatgtagccgatgcagct
cttaaacttggactatatagaagaataggtaatttaagtaatgagatagaagtagagaca
tttaaagatgagatgattgatagattcggtttactaccgattgaatttaataatttactt
gatattgtaaaaataaaactattatgctttaagttaaatattgaaaatctagattcagga
gataacggatttgtgattaaattttataaaaatgccgatatgactgataaaattttaaaa
ttcgttagtacttactctaatcaggcaaaaatcaaaccagataataaattagtatatatc
aagcaattagtagataaaaatataattgttgaggcaaatcaactactttggaatttatcg
gagatgtag
DBGET
integrated database retrieval system
