Roseiflexus sp. RS-1: RoseRS_2452
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Entry
RoseRS_2452 CDS
T00542
Name
(GenBank) alpha amylase, catalytic region
Organism
rrs
Roseiflexus sp. RS-1
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Alpha-amylase
CBM_20
fn3
Malt_amylase_C
Alpha-amylase_N
Y_Y_Y
hDGE_amylase
DUF5696
Motif
Other DBs
NCBI-ProteinID:
ABQ90829
UniProt:
A5UW26
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Position
3032951..3037156
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AA seq
1401 aa
AA seq
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MSHDRRYRWTALFALFGLVIATFALPGAPRVVRASDTPTPASVTIAGSFQSELGCPGDWQ
PECTVTRLVYDATDQVWQATFTIPAGSWEYKAALNGSWDENYGANAQRNGSNIALSLSSP
APVRFYYDHETHWVTSNRNTRIVTAPGDYQSELGCPGDWQPDCLRSWLQDPDGDGTFSAT
VTGLPAGHYQFKIAIDENWSENYGAGSTPGGANIPFSVPAPGYRVTFRFVSATNTPSVTV
VSSGAQPDNNVEWDGVRHDSRDPLYRTPGGAVPAGTPVTIRLRTFHNDVTSVRLRVYDLN
ASAQRFYDMAPAATDVACYQEGLDGKTCDFWEVTLNEASPNNLWYRFIVTDGSDTDYYDD
NTPALDGGLGGMTDDQEDHSWALMFYDPAFTVPEWAKNAVIYQIFPDRFRNGDPRNDPRT
GDSRYDDPVIALPWGELPEGYCRNYSDAATNCPWRFDDTPPSWSPTKESPRGRDYYGGDL
RGVIGRLDYLKNLGVTVIYFNPIFHAKSNHRYDTYDYFRIDPALGTLADFRRLVREAERR
GIRVIVDSVFNHMSSDSPQFDRYGYYATLGACESAASPYRDWFRFRRPGPGEPSPCAPST
PGGDDTYYVGWFGFDSIPEIRKENPAVLNYFVIGPNSVSRYWLRQGASGWRLDVMGDSSF
PPDYWTTFRTVVRETRHDALIIGELWQKDSTLLRHLRGDTADTTMNYRLRDAIIGLLTPG
PFDSKGFADSGRQITPSEFANRISSIREDYPDAAYLTLMNLVGSHDTERILWTLTPGAET
RADKEFNAANLANGKQRLRIASLIQFTMPGAPTIYYGDEVGVTGDDDPDDRRTYPWVETG
GNPDRSLLRHYSDLARIRHHYRSLHAGNLRFLMADDAAGTVAYARISGDDAAIVAINRSS
QSRTVDIPVAGVVPDGTAFFPSYCVANDQLKDWLNVQNGTVRVTLNPMSAVLLTSYLADL
TPPPVPTSLRVTGEGDGQVSLAWNSVPGAAGYNLYRSPLSGGGFVKVNNAPLSATAYTDA
GLRNARDYFYVVTSLDEKGNESAFSNEVQAMPRLQIGWANLQWPPSITHTISAINRTPLI
FGQVWIDGVTNRPGATEGLRAQLGYGPRDSDPAGNPAWIWIEAEFNVDAGNNDEFKASLL
PDQTGDFDYAYRYSTTNGREWTYADLDGIGNGYSPSQAGKLTVVASSDTTPPATPTGLTV
VTASPAGITLRWNAVTGDPTLYGYEVRRSSVAGGPYTTIATVTGVEYTDTSITQGATYYY
VVRAVDTSFNRSANSAEVAATAELRTVSVTFTVTIPPTTPAGSTVYIAGFLDRLDGNLPQ
WNPGGVALTQTGPNQWSITLTGKETTQIEYKYTLGSWDYVEKGAACDEIANRQLTLTYGV
SGVQIVNDSVPNWRNVAPCGN
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgagccacgatcgtcgctaccgctggactgcgctgttcgccctgtttggtctggttatc
gctaccttcgctctccccggcgcaccacgtgtggtgcgcgcctccgacactcccacaccc
gcatcggtcacaattgccggcagttttcagagtgaactgggttgccccggcgactggcag
cctgaatgcaccgtcacccgcctggtgtacgatgcaactgatcaggtctggcaggcgacc
tttacaattcctgctggctcatgggagtacaaggcagcgctgaatggatcatgggacgaa
aactatggcgcgaatgcgcagcgcaatggttccaacattgccctgtcactcagttcaccc
gcccctgtcaggttctactacgaccacgaaacgcactgggtcaccagcaaccgcaatacc
cgcatcgtcaccgcgcccggcgactaccagagcgaactgggttgccctggcgactggcaa
ccggattgtttgcgctcctggttgcaggaccctgatggcgatggaaccttcagtgcgacg
gtaaccggtctgcccgccggtcattaccagttcaagatcgccatcgatgagaattggagc
gaaaactacggtgctggcagcactcctggcggggcgaatattccgttcagtgtgcctgca
cctggctatcgggtgacgttcaggttcgtttcggcgaccaacacgccgtcggtgacggtc
gtcagctccggggcgcagccggataacaatgtcgagtgggatggcgtgcgccacgactcg
cgcgatccgctctaccgcacgccgggtggagcggttccagccgggacgccggtcaccatc
cgtctgcgcaccttccacaacgatgtgacgtcggttcgtctgcgggtgtacgacctgaat
gccagcgcgcaacggttttacgatatggcgcctgccgcaaccgacgtggcgtgctatcag
gaaggtcttgacggtaaaacctgtgacttctgggaggtgacactcaacgaggcgtcgccg
aataatctctggtatcggttcattgtgaccgatggcagcgatacagattattacgacgac
aatacccctgcgctcgatggcggtttgggcggaatgaccgacgatcaggaggatcacagt
tgggcgctgatgttctacgatccggcgtttaccgtgccggagtgggcgaagaacgccgtg
atctaccagatcttcccggatcgcttccgcaatggcgacccgcgcaacgacccgcgcacc
ggcgacagccggtatgacgatccggtcatcgcgctgccgtggggggagttgcctgaggga
tactgccgcaactacagcgacgccgccaccaactgcccgtggcgcttcgacgacacgccg
ccgtcatggagtccaacgaaggagagtccacgtggacgcgactactatggcggtgatctg
cgcggtgtgatcggccggctcgattacctgaagaatctcggcgtgacggtgatctatttc
aacccgatcttccacgcgaagtcgaaccaccgctacgatacctacgactacttccgcatc
gatccggcgctcggcacactcgccgacttccggcgtctggtgcgcgaggcggaacggcgc
ggcatccgcgtgatcgtcgatagcgtcttcaaccacatgtcatcggatagtccgcagttc
gaccgctacgggtactacgccaccctcggcgcgtgtgagtcggctgcatcgccctaccgc
gactggttccgtttccgccgacccggaccgggcgaaccgtcaccctgtgcgccatcgact
ccaggcggcgacgatacctactacgtcggctggtttggcttcgacagcattccggagata
cggaaagaaaatccggcggtgctgaactatttcgtgatcggaccgaacagcgtgtcgcgc
tactggttgcgccagggagcgagcggatggcgcctcgatgtgatgggtgattcgtccttc
ccgccggactactggaccaccttccgcacggtggtgcgcgaaacgcgccacgatgcgctg
atcatcggcgagttgtggcagaaagatagcacgctgctccgacatctgcgcggcgatact
gccgacacaacgatgaactaccgtctgcgcgatgcgatcatcggcttgctgacgccagga
cctttcgactcgaaagggttcgccgacagcggacgccagatcacgccgtcggagttcgcc
aaccgtatcagttccattcgtgaagactaccccgacgctgcctatctgacgctgatgaac
ctggtcggcagccacgacaccgagcgcatcctgtggacgttgacgccgggcgccgagacc
cgcgccgataaggagttcaacgccgccaatctggcgaacggcaaacaacgcctgcggatc
gcttcgctcattcagttcaccatgcccggcgctccgacgatctactacggcgatgaggtt
ggcgtcaccggcgatgacgatcccgatgaccggcgcacctatccgtgggtggagaccggc
gggaatcccgatcgatcgctgctgcgtcactacagcgacctggcgcgcatccgccatcac
taccgctcgctgcacgccggcaatctccgcttcctgatggcagacgatgctgccggaacg
gttgcctatgcgcgcatcagcggcgatgacgcggcaattgtggcgatcaatcgcagttcg
caatcgcgcacggttgatattccggtcgctggcgttgttcccgacggtacggctttcttc
ccttcgtactgcgttgccaatgaccagttgaaggactggctgaatgttcagaacggcaca
gtgcgggtgacgctcaacccgatgagcgccgtgctgctgaccagttaccttgccgatctg
acgccgccgccggttccgaccagcctgcgggtgacgggtgagggcgacgggcaggtaagc
ctggcgtggaacagcgtccccggtgcagccggatacaacctctaccgcagtccgttgagc
ggcggcggtttcgtgaaggtcaacaatgcgccgctgagcgcaaccgcctacaccgacgcc
gggctgcgcaatgcgcgcgactacttctacgtcgtcacatccctggacgagaaagggaac
gaaagcgcattctcgaacgaagtccaggcgatgcctcgcctccagatcggatgggcgaac
ctgcaatggcccccatcgattacccacaccatcagcgcaatcaaccgcaccccgctgatc
ttcggtcaggtctggatcgatggcgttaccaaccgtccgggagcgacggaaggattgcgc
gcgcaactcgggtatggtccacgcgacagcgacccggcaggcaaccccgcatggatctgg
atcgaggctgagttcaacgtcgatgctggcaacaacgacgagttcaaagccagtctgctg
cctgatcaaaccggagatttcgactacgcttatcgctacagcacgaccaatggacgcgaa
tggacctatgccgacctggacggcatcggcaacggctacagcccatcacaggcgggcaaa
ctcacggtcgtcgccagcagcgacaccacgccgccagcgacgccaaccggtctgactgtc
gtcaccgcttcgccagcaggcattaccctgcgctggaacgcggtgactggcgatccgacc
ctctacggctacgaagtgcgtcgcagcagcgtggcaggcggaccgtacaccacgattgcg
acggtcaccggcgtcgagtacaccgacacgtccatcacccagggcgcaacctactactac
gtcgttcgcgcggtggatacgtcgttcaaccgctccgccaattccgccgaagtcgcggcg
accgccgaactgcggacggtgagcgtcacatttaccgtgactataccacccacgaccccg
gcaggcagtacagtctacatcgccgggttcctcgaccgtctcgacggcaacctgccgcag
tggaatcccggcggcgtggcgctgacccagaccggtccgaaccagtggtcgatcacactc
accggtaaggagacaacccagatcgagtacaagtacacccttggttcgtgggattacgtc
gagaagggtgcggcgtgcgacgagatcgccaaccgccagttgactctcacctatggtgtg
agcggtgtgcagatcgtgaacgatagcgtaccaaactggcgcaatgttgcgccgtgcggc
aactga
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