Roseiflexus sp. RS-1: RoseRS_3660
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Entry
RoseRS_3660 CDS
T00542
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rrs
Roseiflexus sp. RS-1
Pathway
rrs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rrs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RoseRS_3660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrs03400
]
RoseRS_3660
Enzymes [BR:
rrs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RoseRS_3660
DNA repair and recombination proteins [BR:
rrs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RoseRS_3660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABQ92015
UniProt:
A5UZG2
LinkDB
All DBs
Position
complement(4578722..4582519)
Genome browser
AA seq
1265 aa
AA seq
DB search
MSVTTCATVLAEITAIAPVQDLIATLHAHRGARLHIAPTPGAARTPLVAAFTLQGVAPLL
YLVGTTDAALRAHEDLRQWIGTDRVFLFPASDALPYEHMSTGADILTARLRVLHRLAAFN
AGDVDVAPFVIVAPVKALMQPSLTPDELRDASVRLERGMAYALDDLIERLIAMGYRYAPT
VEEPGEVNRRGGIIDVFSPGDDLPLRIEFFGDEIDSLRRFDPLTQRSEAQIRAAIIGPPH
EFPLWRRDVALERMRAIDTSMLRHEALDEWLQAFDHIRNGERFEGRALFAPFFRDNPQAP
GTLLHHLPPGAPVVLSEALLLAQHATELDQQAETRRRQQIDAGELPAAFPRPYLRWHELM
ALAEAHTLVNLSNNEHPFWDVLLSDPAPLPPSFSFGEQNGNPAPLTDTRNVHPSEDRFRV
HLLPERLFAPAELFGGQIRRLVDDVVERLRAGERVVLITPQAARLQELVTEALQRDASDG
VENVVSGLTVLHGTLDEGFRMPALNLTLYSDTEIFGWRQRRIIADRRRRHDRRAEDRAAF
LRGLKPGDYVVHIEHGIAVYEGLIRRSVGGIERDYLNLRYAEGDRLYVPVDQIDRVSRYI
GAGDVEPQLTRLGTQDWERAKRKARAAVQDLAEELITLYAQRQLAEGHAFSPDTEWQREL
EASFPYVETPDQLKAIIDVKRDMEQPQPMDRLVCGDVGFGKTEVALRAAFKAVQDGKQVA
VLAPTTVLVQQHYDTFSRRMAAFPVRIDMISRFRSAKEQSEIVQRLARGEIDIIIGTHRL
LSKDVVFKDLGLLVIDEEQRFGVRHKERIKQLRTNVDVLTLTATPIPRTLHMALAGIRDL
SIIDTPPEDRIPIKTYVLPYDERLIREAILRELDRGGQVYFVHNRVQSIYYVADRLRRLV
PEARIAVGHGQLEEHQLERVMLDFFTGRDDVLVCTTIIESGLDVPNANTIIIDDATNFGL
AQLYQLRGRVGRSTQRAYAYLFYKSERPSTPEAQERLRAIQEATELGAGFRIAMRDLEIR
GAGNLLGAEQSGHIAAVGFDLYSRLLEQAVRTLKQRLIATNFITGTDAMRTSPGAPAQPS
DGQTPPPARSSVPSRRPAVRVDEKVLISPLVTLDLPLDAYLPVDYIPDDRVRLAVYQRMA
EAQTPEAVRDLRQELRDRFGELPEPADQLLIWLRIKALALAAGVTSVVTTDAEFIIRLPE
GNDQARSRLERRFARARGIRIGPQFVRLDRRVHNAGGDPAWIEVMCDVLAVLGEGKTVEG
QGVER
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtgaccacctgtgctactgtgcttgcagaaatcaccgccattgcgccagtgcag
gacctgattgcaacgctgcacgctcatcggggggcgcgcctgcatatcgcgccgacgcca
ggcgcagcgcggacgccgctggttgccgcctttaccctccagggcgttgcgccgctgctg
taccttgtgggcacaaccgatgcggcgctgcgcgcgcatgaagatctgcggcagtggatc
ggcacagatcgggtattcctgtttccggcgagcgatgcgcttccgtatgagcatatgtca
accggcgccgacattctgacggcgcggttgcgtgtgctgcatcgcctggcggcgttcaac
gccggcgatgtggatgtggcgccgttcgtgatcgtcgctccggtcaaagcgttgatgcag
ccatcgctgacgcccgatgaactgcgcgatgccagtgtgcgcctggagcggggcatggcg
tatgcgctcgatgatctgatcgaacggttgatcgctatggggtatcggtacgcgccgacg
gtcgaggagccgggcgaagtcaaccggcgcggcggcatcatcgatgtgttttcgccgggg
gatgatcttccgctgcggattgagttctttggcgatgagatcgatagtctgcggcggttc
gatccgctgacgcagcgcagcgaggcgcagatccgcgctgcgatcatcggtccgccgcac
gagttcccgctgtggcgacgcgatgttgcgctggaacgaatgcgcgctatcgatacgtcg
atgctgcggcacgaagcgctcgatgagtggttgcaggcgttcgatcacatcaggaatggg
gagcgcttcgaggggcgcgcgctgtttgcaccattcttccgcgataacccgcaggcgccg
ggtacactgctgcaccatctgccgccaggggcgccggtggttctcagcgaggcgctgctg
ctggcgcagcacgcaaccgaacttgatcagcaggcggaaacgcgccgccgtcagcagatc
gatgctggcgaattgccagcagccttcccgcgcccctatctccgctggcacgaactgatg
gctctggcggaagcgcacacgctggtgaatctcagcaacaacgaacatccgttctgggat
gtactgctgtccgatcctgcaccgcttccaccatccttttcattcggggaacagaacggc
aatcctgcgccattgaccgacacccgcaacgtacacccctccgaagaccgcttccgggtt
catctcctgccagaacgcctgtttgcgcctgccgaactgttcggcggacagatccggcga
ttggttgacgatgtcgtcgagcgactgcgcgccggtgagcgggtggttctcatcacgcct
caggcggcgcggttgcaggaactcgtcacagaagcgttgcagcgcgatgcatcggatggt
gtggagaacgttgtatccgggttgactgttctccacggtacgcttgacgaaggcttccgt
atgccagcgctcaacctgaccctctacagcgacaccgagattttcggttggcggcagcga
cgcatcattgccgatcgtcgccgtcgccatgatcgccgcgcagaagaccgcgccgccttt
ctgcgcggattgaaaccgggcgattatgtggtgcatatcgagcatggcattgccgtctat
gaaggattgatacgacgaagcgtcggcggcatcgagcgcgactacctgaatctgcggtat
gccgaaggcgaccggctctacgtgccggtcgatcagatcgatcgcgtgtcgcgctacatt
ggcgcgggcgatgtcgaaccgcaactcacccgcctgggcacgcaggactgggaacgcgcc
aagcgcaaggcgcgcgcggctgtgcaggatctggcggaagagttgatcaccctctatgcg
caacgtcaactggcggaggggcacgccttcagcccggataccgaatggcaacgcgaactc
gaagccagtttcccctatgtcgaaacgcccgaccagctcaaagcgatcatcgatgtcaaa
cgcgatatggagcagccgcaaccgatggatcgtctggtctgcggcgatgtcgggtttggt
aagacggaagtggcgctgcgggcggcgttcaaagcggtgcaggacggtaaacaggtggca
gtgctggcgccaaccaccgtgctggtgcagcagcactacgacaccttcagccggcgcatg
gcggcattcccggtcaggatcgatatgatttcccgctttcgttcggcaaaggagcagagc
gagattgtccagcgcctggcgcgcggcgaaatcgacatcattatcggcacccaccgtctg
ctctcgaaagatgtggtcttcaaagacctgggactgctggtgatcgacgaggagcagcgc
ttcggcgtgcgccacaaagagcgtatcaaacagttgcgcaccaatgtggatgttctgacc
ctgacggcaacgccgatcccgcgcacgctccacatggcgctggcaggcatccgcgatctc
agcatcatcgatacgccgccggaggaccgtattccgatcaaaacctacgtgttgccctac
gacgaacgcctgatccgtgaagccattctgcgtgaactcgaccgcggcggacaggtctac
ttcgtgcacaatcgggtgcagagcatctactatgttgccgaccggctgcgccggttagtg
ccggaagcccggattgccgtcgggcacgggcaacttgaggaacatcaactggaacgggtg
atgctcgactttttcaccggcagagatgatgtgctggtctgcacgacgatcatcgagagc
ggattggacgtgcccaacgccaacacgattatcatcgacgacgccaccaattttggtctg
gcgcagttgtaccagttgcgcggtcgggtcgggcggagcacccagcgcgcctatgcatat
ctattctacaagtcggaacgtccttcgacgccggaggcgcaggagcgattacgggcaatt
caggaagcgaccgaactcggcgcagggttccgtatcgccatgcgcgatcttgagattcgc
ggcgcaggaaacctgctgggtgctgagcagagcggacatatcgccgcagttggctttgat
ctctactcgcgtctgcttgagcaggcggtgcgcacgctgaaacagcggttgatcgcaacg
aactttatcaccggcacagacgcaatgcgcacatccccaggcgcgccagcgcaaccttcc
gacgggcagacgccgccgcctgcacgttcgtccgttccctccagacgaccggcggtacgg
gtggatgaaaaggtgctgatctcgccgctggtcacgctcgatctcccgctcgacgcttac
ctgccggtcgattacattcctgatgatcgggtgcggctggcggtgtaccagcgtatggcg
gaagcgcaaacgccagaagcagtgcgcgacctgcgccaggaactgcgtgaccggttcgga
gaactgccagagccagcagatcaactgctgatctggttgcgcatcaaggcgctggcgctg
gctgccggtgtgacatcggtcgtcaccaccgatgccgagtttatcattcgcctgccggaa
gggaacgatcaggcgcgatcaagactggagcggcgcttcgcccgcgccagaggcatacgt
atcggaccgcagtttgtgcgtcttgaccggcgtgtgcataacgcaggcggcgatccggcg
tggatcgaggttatgtgtgatgtgctggcggtattgggggaagggaagacggttgaaggt
cagggggttgaacgttga
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