Rhodococcus rhodochrous: 4535765_00993
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Entry
4535765_00993 CDS
T05521
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rrt
Rhodococcus rhodochrous
Pathway
rrt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rrt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
4535765_00993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrt03400
]
4535765_00993
Enzymes [BR:
rrt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
4535765_00993
DNA repair and recombination proteins [BR:
rrt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
4535765_00993
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Big_4
Motif
Other DBs
NCBI-ProteinID:
SNV13781
LinkDB
All DBs
Position
1:1043973..1046324
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AA seq
783 aa
AA seq
DB search
MPTRTIDGHRITLTNLDKVLYPSTGTTKGEVVEYYEAVADAMLPHIVGRAATRNRWPNGV
GEQSFFEKNLPDHAPAWIDRRTLHHKDRRVTYPLFDSAAGLVWLGQQAALELHVHQWRFD
GEKAGPATRIVFDLDPGPGVGLAECAEVARHVRDTVAELGWTAYPVTSGSKGIHLYVPLD
RMLSSSGASKVAKQVARNLETTLPDLVTATMAKSAREGKVFVDWSQNNSSKTTVAPYSLR
GREEPWVAAPRSWDELDDPDLGQLQFREVLARIDEFGDLLAGLDPPLGKAGSSGKAGSGD
ALDAYRGKRDASRTPEPVPDRVPEDGPGNRFVIQEHHARRLHYDLRLERDGVLASWAVPK
NLPDTSGRNNLAVRTEDHPIEYLTFHGTIPKGEYGAGSMTVWDTGTYETEKWRDDEVIVR
FHGDRVEGRYALIRTEKNQWLAHRMKDQSPPSTGSSDAEPASLVGSSGSKAFPRDLAPML
ATPGDVSGLDAEDWAFEGKWDGYRAIAEIEDDTVRLRSRSGRDVTGDYRKLAELATILDG
HRAVLDGEIVAVDRSGVTSFSMLQRGVNYEYRVFDVLYLDGVSLLRKSYDDRRRVLEALA
AATDGLIVPDLLPGDGSKALERSRVKNWEGVVAKRRDSVYLPGKRGAGWIKSKNWLTQTV
VLGGYRRGKGNRASTFGSLLLGVYDDDGEFVYVGKVGTGFDDETLLSVTKTMKGRTSRTN
PFANEVPAAERRDAVWLRPELVGEVRFGGWTDGDRVRHASWRGLRDDVDASSVVREEETG
ADC
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgccgacccggacgatcgacggtcaccgcatcaccctgaccaacctcgacaaggtgctg
tatccgagcaccgggacgacgaagggtgaggtcgtcgagtactacgaagccgtcgccgac
gcgatgcttccccacatcgtgggcagggcagcgacccgcaaccggtggccgaacggtgtc
ggcgaacagtccttcttcgagaagaacctccccgaccacgcaccggcctggatcgaccgt
cgcaccctgcaccacaaggaccgccgggtcacctacccgctgttcgattccgccgccgga
ctcgtctggctcgggcagcaggccgccctcgaactccacgtgcaccagtggcgtttcgac
ggagagaaggccggacccgcgacccgcatcgtcttcgacctcgatccgggccccggcgtg
ggcctggccgagtgcgcggaggtcgcccgccacgtgcgcgacaccgtcgccgaactcgga
tggacggcctatccggtcaccagcggcagcaagggcatccacctgtacgtcccactcgat
cggatgctgtcgtcgtcgggggcgtcgaaggtcgcgaagcaggtcgcacgcaatctcgag
accaccctgcccgacctggtgaccgcgacgatggcgaagtcggcgcgcgagggcaaggtc
ttcgtcgactggagccagaacaacagttccaagacgacggtcgcgccgtactcgctgcgc
ggccgcgaggagccgtgggtggcggcgccgcgcagctgggacgagctcgacgaccccgac
ctcgggcaactgcagttccgggaggtcctcgcccgcatcgacgagttcggggatctgctc
gccggtctggacccgcccctcggcaaggccgggtccagcggtaaggccgggtcgggagac
gccctggatgcctaccgcggcaagcgcgacgcgtcgcgcaccccggaaccggtacccgac
cgcgtccccgaggacggccccggcaacaggttcgtcatccaggagcaccacgcgcgtcgc
ctgcattacgacctgcgcctcgaacgcgacggtgtgctggcctcgtgggccgtaccgaag
aacctgccggacacctcggggcgcaacaatctcgcggtacggaccgaggaccacccgatc
gagtacctgaccttccacgggacgatcccgaagggcgagtacggcgccggcagcatgacc
gtgtgggacaccggcacctacgagaccgagaagtggcgggacgacgaggtgatcgtgcgg
ttccacggcgacagggtcgagggacggtacgcgctgatccgcaccgagaagaaccagtgg
ctggcgcaccgtatgaaggaccagtcgccgccgagcaccgggtcgtccgatgccgagccg
gcctccctcgtcggatcgtcggggtccaaggccttcccgcgcgatctcgcgcccatgctc
gcgacccccggcgacgtctcgggtctcgatgccgaagactgggcgttcgaaggcaagtgg
gacggataccgcgccatcgcggagatcgaggacgacaccgtcaggctccgcagccgatcc
ggacgcgatgtcaccggcgactatcggaaactcgctgaactcgcgacgatcctcgacggt
caccgggcggtgctcgacggggagatcgtcgccgtggaccgatccggggtgacgagcttc
tcgatgctgcagcggggcgtgaactacgagtaccgcgtgttcgacgtgctgtatctcgac
ggggtgtcgttgctgcgcaagagctacgacgatcgccgacgagtcctcgaggcgctcgcc
gccgcgacggacggattgatcgtcccggatctgctcccgggtgacggttcgaaggccctc
gaacgcagcagagtgaagaactgggagggcgtggtcgccaagcgccgggactccgtgtat
ttgccgggcaagcgcggcgccgggtggatcaagtcgaagaactggctcacccagaccgtc
gtgctcggcggataccgccgcggcaagggcaaccgtgcctcgaccttcggctccctgctg
ctcggcgtctacgacgacgacggcgagttcgtgtacgtcggcaaggtcggcaccggtttc
gacgacgagacgctcctgtcggtgacgaagaccatgaaagggcgcacgagccgcacgaac
ccgttcgcgaacgaggtgccggccgccgaacgccgcgatgcggtgtggttgcggcccgaa
ctcgtcggggaggtgcgattcgggggatggacggatggggaccgtgtgcggcacgcgagc
tggcgcggtctgcgcgacgacgtggacgcgtcgagcgtggtgcgagaagaggaaacgggc
gccgactgctaa
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