Rhodoferax saidenbachensis: RS694_03365
Help
Entry
RS694_03365 CDS
T04623
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
rsb
Rhodoferax saidenbachensis
Pathway
rsb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rsb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RS694_03365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsb03400
]
RS694_03365
DNA repair and recombination proteins [BR:
rsb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RS694_03365
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RS694_03365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
ABC_tran
AAA_29
SMC_N
AAA_21
nSTAND1
AAA_16
RsgA_GTPase
AAA_22
AAA_25
AAA_18
Viral_helicase1
NACHT
AAA_23
UvrA_DNA-bind
nSTAND3
AAA_33
DnaJ_CXXCXGXG
DUF4350
RNA12
IstB_IS21
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
APW41681
UniProt:
A0A1P8K6W3
LinkDB
All DBs
Position
702215..708442
Genome browser
AA seq
2075 aa
AA seq
DB search
MSQGTIRIRGARQHNLKNLDLDIRTGELTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFS
AYARQFLDRMDKPAVDKVEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLFSRAGSL
FDKQTALPVQHDTPETIYTELVRRAAAENDPRVILTFPVELPADTSAEEVTQWLSASGFT
RIHAEREVEVASDAPPDAGKAAAKKTKAKADAATKAAASTRKVLDVVADRFRIAGAEKAR
VLDAIELALKRGSGRLNVYVMPDATNEPVRPEPVEGSVSTSSTRTGGALWRFSTGLHCPQ
SDLRYTDPIASMFSFNSAVGACEACRGFGRVVGVDYGLVIPNDKLTLRAGAVKPMQTPAW
QECQDDLMRHAEAAGIPRDTPWYKLTEEQKNWVYKGSPNWNGKWNQHWFGVDRFFEYLES
KAYKMHIRVLLSKYRSYTPCGTCGGARLKTESLLWRIGTKEQADAVLAPSKRFMPQGVQW
TREQLEALPGLCLHDMMLMPLDKLRRFFDSLQVGLNVSEGSEADAKTLKLLFEEVCTRLK
YLCDVGIGYLTLDRQSRTLSGGEVQRINLTTALGTSLVNTLFVLDEPSIGLHPRDMHRII
VAMQRLRDAGNTLVVVEHDPAVMLAADRMIDMGPGPGEKGGQIVFDGTTDDLKTSDTMTG
AYLGGRKQVGMGFKRMVAANTPRLVLEGATEHNLKNVTVEIPLQRLVCVTGVSGSGKSTL
IQDVLAPALLRHFGKATETPGAHARLLGAEQISEVVFVDQSPIGKTARSNPVSYVGAWDA
IRELFAGAALARERSYTASKFSFNSGDGRCALCGGSGFEHVEMQFLSDVYLRCADCDGKR
YRPEILEVTIERKGRNVNVADVLDLTVSEAADLFSADRDVIRVLQPIVDVGLEYVKLGQP
VPTLSGGEAQRLKLAGFLAEAAKGKSASAQFLAKRGSLFMLDEPTTGLHFDDIAKLMRAL
RKLLDAGHSLVVIEHNLDVIRASDWLIDLGPEGGDAGGEVVAFGTPEDVMLHATSHTGQA
LRDYAAAMGVVHEVSEPSAKYLALAAADGLTPGASYGKPKSLPGASPSAAGGGVGDASNS
IRIVNAKEHNLKSLSVDIPRGKFSVVTGVSGSGKSTLAFDILFNEGQRRYLESLNAYARS
IVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVGTTTEVWHFLRLLYVKLGTQHCVND
GAAVAPQTADSIAAQLLKTYRGQHIGLLAPLVSGRKGVYTELADWARPRGFTHLRVDGNF
LPTTGFPRIDRFKEHNIELPVASLDVSPAREAELRNALAQALTHGKGVVHVLSGMDGLRE
AMLAGNPAAGIGNVQVFSTKRACPICSTSYAELDPRLFSYNSKHGWCPDCVGTGVALTKD
QRKVFDDSVKDDDNKGREQTFAEADIEDLHDATCPTCQGTRLNATARAVRFGFQLASEAT
VDVDATAAVDGIAITTLARLSVTDIRKWVETLQALGRLSQRENDIARDLIPEIRSRLEFL
EEVGLGYLTLDRGAPTLSGGEAQRIRLAAQLGSNLQGVCYVLDEPTIGLHARDNKILLGA
LQSLSDKGNTLVVVEHDEDTIRHADHIIDIGPSAGKRGGRLVAQGSVADVQNAADSQTGR
YLLHAMKHPLAVRRWAESFDASSARSAAEAGSTPVGVAKPVKKLTGKAAKAAVVAANAAM
SAAANAELVDQARIAAEYAALADRSLSKTSVSAELPAAVAEKIDWLTVTGANLHNLQNVT
AHVPLKRLVAITGVSGSGKSTLARDVLLANVQTAVQKRSTKAGRDALDAGEKIQWMGCEG
VSGFETVDRVLEVDQTPIGKTPRSCPATYIGFWDTIRKLFADTLEAKARGYAANRFSFNT
GEGRCPGCEGQGIRTIGMSFLPDVKVLCETCKGARFNPETQAVTWRGKNIGDVLQMEVDE
AVDFFAAMPVIAHPLQLLKDVGLGYLTLGQPSPTLSGGEAQRIKLVTELSKVRDDIGKRG
QKAPHTLYVLDEPTVGLHMADVEKLIHVLHRLVNAGHSVVVIEHDLDVIAEADWVLDLGP
EGGNGGGRVVAATTPEEVVRLGTHTGKALEAVLAR
NT seq
6228 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagggcaccatccgcattcgcggggcgcgtcagcacaatctcaagaaccttgac
ctggacattcgcaccggcgaactgacagtggtgaccggtcccagcggctcgggcaagtcc
agtctggtgttcgacacgctatacgccgaaggccagcggcgctacgtggaaaccttctca
gcctatgcgcgccagtttctggaccgcatggacaaaccggcggtcgacaaggtggagggc
gtaccacccgcgattgccatcgaccagaccaacccggtccgttccagccgctccaccgtg
ggcacgatgacggagctcaacgaccatttgaaactgctgttctcgcgcgctggcagcctg
tttgacaagcaaaccgcattgccagtgcaacacgacacgcccgagacgatttatacggag
ctggtgcgcagggctgcggctgagaacgatccccgcgtgatattgacgtttccggtggag
ttgcctgccgacacgtctgccgaagaggtcacccaatggctcagcgccagtggcttcacc
cgcatccacgccgaacgcgaagtcgaggtggcttccgatgcgccgcccgacgcaggcaaa
gctgcggcaaagaaaaccaaagcgaaagcggacgcggccaccaaagctgcggcctcgact
cgcaaggtgctggatgtggtcgccgaccgctttcgcatcgccggtgcggaaaaggcccgc
gtgctcgacgcgattgagttggccctgaagcgcggcagcggtcgcctcaatgtttatgtg
atgcctgacgcgacgaacgaacccgttcggcctgagcctgtcgaaggcagcgtttcgaca
agctcaacgcgaacggggggcgcgctgtggcgtttctccaccggcctgcactgcccgcaa
agcgatctgcgctacaccgatcccatcgcgtcgatgttctcgttcaactccgcagtcggc
gcctgcgaagcctgccgcggctttggccgtgtggtcggcgtggactacggcctggtcatc
cccaacgacaagctcacgctgcgtgcgggtgctgtgaagccgatgcagacgcccgcatgg
caggagtgccaggacgacctgatgcgccacgccgaggcagcaggtattccgcgcgacaca
ccctggtacaagctgaccgaggaacagaagaattgggtctacaagggctcgcccaactgg
aacggcaaatggaaccagcactggtttggcgtggatcgtttctttgagtacctggagtcc
aaggcctacaagatgcacattcgtgtgctgctgtccaagtaccgcagctacacgccgtgt
ggcacctgcggcggcgcgcgattgaagaccgagagcttgttgtggcgcattggtactaag
gagcaagctgatgcagtgctcgcgccttccaaacgtttcatgccgcaaggcgtgcagtgg
acgcgcgagcaactggaggctctgccgggcctgtgtctgcacgacatgatgctgatgcct
ctcgacaaactgcggcgtttcttcgattcgctacaagtggggctgaacgtatccgaaggc
tcggaggcagatgccaaaaccctcaagctgctgttcgaagaagtttgcacgcgtctgaag
tacctgtgcgacgtcggtattggctacctgacgctggaccgccagagccgcacgctgagc
ggcggcgaagtgcaacgcatcaacctgacgaccgcgctgggcacttcgctggtcaacacc
ctgtttgtgctggacgaacccagcatcggtctgcacccacgcgatatgcaccgcatcatt
gtggcgatgcaacgcctgcgcgatgcgggcaatacactggttgtcgtggagcatgacccg
gccgtgatgctggcggcggaccgcatgatcgatatggggccgggacctggcgaaaagggt
gggcagatcgtgtttgacggcacgacggacgatctcaaaacttccgacaccatgacgggt
gcttacctcggtgggcgcaagcaggtcggtatgggcttcaagcgcatggtcgccgccaat
acgccgcggctggtgctggaaggtgcgaccgaacacaacctgaaaaacgtgacggtagag
attccgctgcagcgcctggtgtgcgtgaccggcgtgtccggctctggcaagtccaccttg
attcaggatgtgctggcccccgcgctgttgcgccactttggcaaagcaacagagacgccc
ggtgcacacgcacgcctgctgggtgcggaacagatcagcgaagtggtgtttgtcgaccag
tcgccgattggcaagacggcgcgctccaacccggtcagttatgtgggtgcgtgggacgcg
atccgcgagctgtttgccggcgccgcattggcgcgtgaacgcagttacacagccagcaag
ttcagtttcaacagcggcgatggccgttgcgcgctgtgcggcggctcgggctttgagcat
gtggagatgcagtttttgagcgacgtgtatctgcgttgcgcggattgcgacggcaaacga
taccggcccgagattctggaagtcacgattgaacgcaagggtcgcaacgtcaatgtggct
gatgtgctggatttgacggtcagcgaagcagctgatttgttcagcgctgatcgtgatgtg
atccgcgtgttgcagcccatcgtcgatgtggggctggagtatgtgaagctgggccaacca
gtgcccacgctatcaggcggcgaggcgcagcgcctcaagctcgcaggctttctggccgag
gcggccaagggcaagagcgcaagtgcccagttcctggcgaagcgcggttcgctgtttatg
ctggacgagccgactaccggcttgcactttgatgacattgccaagctgatgcgcgcgttg
cgcaagctgctggacgcggggcattcgctggtggtgattgaacacaacctggatgtgatt
cgtgcttcagactggttgattgacctcgggcccgaaggcggtgatgcgggcggtgaggtg
gtggctttcgggacgccggaagatgtgatgttgcatgcgacgtcgcataccgggcaggca
ctgcgcgactatgcggcggctatgggggtagtgcatgaggtttccgagccttctgcgaaa
taccttgcgctcgctgctgcggacggacttacgccgggcgcctcatatggcaagccgaaa
tcgttgcccggcgcaagcccatccgcagcgggcggtggtgtgggtgacgcttccaactcc
attcgcatcgtgaatgcgaaggagcacaacttgaagtccttgtcagtggacattccacgg
ggcaagttcagtgtggtgacgggtgtgtctggttctggaaaatcgactctggcttttgac
attctgtttaatgaaggacagcggcgttatctggaatcgctcaacgcgtatgcacgctcc
atcgtccaaccggcagggcggcccgaggtggatgcggtgtatggcattccgcctaccgtc
gcgatcgaacagcgcctgtcgcgcggcgggcgcaagtccaccgtaggcacgacgactgag
gtgtggcatttcttgcggctgctctacgtcaagctcggtacgcagcattgtgtgaacgac
ggcgcggcggtggcgccgcagacggcggacagcattgcagcgcagttgctcaagacctat
cgcgggcagcacatcggtttgctcgcgccgctggtgtcgggtcgcaagggcgtgtacacc
gagctggcggactgggcgcgaccgcgtggcttcacgcacttgcgcgtggatggcaacttc
ctgccaaccacgggctttccgcgcattgatcggttcaaggagcacaacatcgagctgccc
gtagcgagcctggatgtcagcccggcgcgtgaggccgagctgcgcaatgcgctggcgcaa
gcactgacgcatggcaagggcgtagtgcatgtgctctcgggcatggacggtttgcgcgaa
gccatgctggcgggcaacccggcggcgggtattggcaatgtgcaggtgttctccaccaaa
cgtgcctgcccgatctgctcgacgtcctatgccgagctagacccgcgcctgttctcgtac
aacagcaaacacggttggtgcccggactgcgtaggcaccggtgtcgcgttgaccaaagac
cagcgcaaggtgtttgacgattcggtgaaggacgatgacaacaagggccgcgagcagacg
tttgcggaggccgacatcgaagacctgcatgacgcaacatgccccacgtgccagggcacg
cggctgaacgcaacagcgcgcgcggtgcgtttcggttttcagctggcgagtgaagccacc
gtagacgtggatgcaaccgccgcagtggatggcattgccatcacgacgttagctcgcctg
agtgtgactgacattcgcaaatgggttgaaactttgcaagccctgggccggttgagccaa
cgggaaaacgatatcgcccgcgatttgattcccgagatcaggagtcgcctggagtttctg
gaagaagtggggctgggctacctcacgctggaccggggcgcacccacgctgtccggtggc
gaggcgcagcgtatccgtctggccgcacaactcggtagcaatctgcaaggcgtgtgttac
gtgctggacgagcctacgattggcctgcatgcgcgcgacaacaagattctgttgggcgct
ttgcagtctttgagtgacaagggcaatacgctggtcgtggtggagcacgacgaagacacg
attcgccatgcggaccacatcattgacattgggcctagcgcgggcaaacgcggtggacgg
ctggtggcgcagggctcagttgcagatgtgcagaacgctgccgattcgcagaccgggcgt
tacctgttgcatgcgatgaagcaccccttggcagtgcgccgatgggcagagtcgtttgac
gcctcttctgcgcgcagcgcagcagaggccggctccacccccgttggcgtagccaagccc
gtgaagaagctcaccggaaaagccgccaaggctgcggtagttgccgccaatgcggccatg
agtgcggcagccaacgcggaacttgttgaccaggcacgtattgctgctgaatatgcggcg
ctggccgaccgctcgttgtccaagacttctgtgtctgccgagcttcccgctgcagtggca
gaaaagatcgactggctgaccgtcacaggcgccaacctgcataacttgcaaaacgtcaca
gcccatgtgccactcaaacgcttggtggccatcaccggtgtttccggttcgggcaagtcc
acattggcgcgcgacgtattgttggccaacgtgcaaaccgccgtgcaaaaacgcagcacc
aaggctggtcgcgatgccttggatgcgggcgaaaaaatccagtggatgggctgcgagggt
gtaagcggttttgagacggtagaccgcgtgctggaagtggaccagacgcccatcggcaaa
actccacgctcctgccccgcgacctacatcggtttctgggacaccatccgcaaactcttt
gccgacacactggaagccaaggcgcgtggttacgcggctaaccgtttcagcttcaacacc
ggtgaaggccgctgcccgggttgcgaaggacagggcattcgcaccattggcatgagcttc
ttgccggatgtgaaggtgctgtgtgaaacctgcaagggcgcccgcttcaaccccgagacg
caggccgtcacctggcgcggtaagaacattggtgatgtgctgcaaatggaagtcgacgag
gcggtcgacttcttcgctgccatgcccgtcatcgcgcacccgctgcaactcctcaaggat
gtgggcctgggctacctcacgctgggccagccgtcaccgacgttgtccggtggcgaggcg
cagcgtatcaagctggtgaccgagctctccaaggtgcgcgacgacattggcaagcgcggc
cagaaggcgccgcacacgctgtatgtgctggacgagccgaccgtgggcctgcacatggcc
gatgtggaaaaactcatccatgtgctgcaccgcctggtcaacgcgggccacagcgtggtc
gtcattgagcatgacctcgatgtgatcgctgaagccgactgggtgctggatttgggcccc
gaaggtggcaacggcggcggccgtgtggtggctgccacgacgcccgaagaggtggtgcgc
ctgggcacacacaccggcaaagcgctggaggctgtgttggcacgctga
DBGET
integrated database retrieval system
