Ralstonia solanacearum CFBP2957: RCFBP_11651
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Entry
RCFBP_11651 CDS
T01272
Symbol
mfd
Name
(GenBank) transcription-repair ATP-dependent coupling factor, helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rsc
Ralstonia solanacearum CFBP2957
Pathway
rsc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RCFBP_11651 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsc03400
]
RCFBP_11651 (mfd)
Enzymes [BR:
rsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RCFBP_11651 (mfd)
DNA repair and recombination proteins [BR:
rsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RCFBP_11651 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
AAA_30
SNF2-rel_dom
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
CBJ42942
LinkDB
All DBs
Position
complement(1703316..1706759)
Genome browser
AA seq
1147 aa
AA seq
DB search
MSDFSPPFTLSALPLVKPGQRFVFSGLQGSADALLLARYLEQHRATAPMLAVVCANAVDA
QRLADELRWFAPQARVKLLPDWETLPYDNFSPHQDLISERLATLHDLQGGACDLLLVPAS
TALQRIAPPSFLAAYTFFFKKGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDL
FPMGSPMPYRLDLFGDEIETIRAFDPDTQRSLYPVNEVRLLPGREFPMDEAARTAFRGRW
REVFEGDPTRAPIYKDIGNGVPSAGIEYYLPLFFEETATLFDYLPATAHLALVGDIEAAV
RRFWADTTQRYNFMRHDRDRPLLAPPALYLDEEAFFVAAKPHARLVLRAEAGDAPLSLPL
PNVAVNRRAEDPLVNLEAFLMRGDCRVMICAESAGRRETLAQMLAASGLHPEGVADCADL
MGGEARFVLGVAPLYQGFILGDERIAFITETELYAQAVRRSGRRKQEQATAVDAMVRDLA
ELKIGDPVVHSEHGIGRYQGLVSIDMGNGEEEFLHLDYDKGSKLYVPVHQLHVISRYSGA
DPDTAPLHQLGSGQWEKAKRRAAQQIRDTAAELLNLYARRALRQGFAFPLTPNDYEAFAE
SFGFDETPDQAAAITAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAML
APTTLLAEQHYQTLADRFADWPVRIAEISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLS
PDVQFDRLGLVIIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSV
IATAPQKRLAIKTFVRREEDSVLREAILRELKRGGQVYFLHNEVETIENKRAKLEALVPE
ARVAVAHGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLAQ
LHQLRGRVGRSHHQAYAYLLVHDAEGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGA
GEVLGDKQSGEISEIGFQLYTDMLNQAVKSLKAGKEPDLMAPLAATTEINLGTPALLPSD
YCGDVQERLSLYKRLANCESGETIDNIQEELIDRFGKLPPQAQSLIETHRLRIAAVPLGI
RKIDTGADAVTLQFVPNPPVDAIKIIDLVQKNRQIKLAGQDRLRIENIPTETAALAQAIR
HTMRQLA
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatttctcgccgccttttaccctgagtgccctgcccctcgtcaagccgggccag
cgcttcgtcttcagcggcctgcagggctcggccgatgcgctgctgctggcgcgctacctg
gagcagcatcgcgccaccgcgccgatgctggcggtggtctgcgccaatgccgtcgacgcc
cagcggctggccgacgagctgcgctggttcgccccgcaggcccgcgtgaagctgctgccg
gactgggaaacgctgccgtacgacaacttctcgccgcaccaggacctgatctccgagcgg
ctggcgacgctgcacgacctgcagggcggcgcgtgcgatctcctgctggtgccggcctcc
acggcgctgcagcggatcgcgccgccgtcgttcctggcggcctacacgttcttcttcaag
aagggcgagcggctggatgaggcggcgctcaaggcgcagttcacgctggccggctacgag
cacgtcagcgctgtgatgcgccccggcgaatacagcgtgcgcggcggcctgatcgacctg
ttcccgatgggctcgccgatgccctaccggctcgacctgttcggcgacgagatcgaaacc
atccgcgccttcgaccccgacacgcagcgcagcctctatccggtgaacgaagtgcgcctg
ctgccgggccgcgagttcccgatggacgaggccgcgcgcacggctttccgcggccgctgg
cgcgaagtgttcgagggcgatccgacccgcgcgcccatctacaaggacatcggcaacggc
gtgccctcggccggcatcgagtattacctgccgctgttcttcgaagaaacggcgacgctg
ttcgactacctgccggccaccgcgcacctggcgctggtcggcgacatcgaagccgcggtg
cgacgcttctgggccgacaccacgcagcgctacaacttcatgcgccacgaccgcgaccgg
ccgctgctggcgccccccgcgctgtacctcgacgaagaggcgttcttcgtcgccgccaaa
ccgcatgcgcgcctcgtgctgcgcgccgaggcgggtgatgccccgctctcgctgccgctg
cccaacgtggccgtcaaccgccgcgcggaagacccgctggtcaatctcgaagcgttcctg
atgcgcggcgactgccgcgtgatgatctgcgcggaatccgccggccggcgcgagacgctg
gcgcagatgctcgccgccagcggcctgcatcccgaaggcgtggccgactgcgccgacctg
atgggcggcgaggcccgcttcgtgctcggggtggcgccgctgtaccagggcttcatcctg
ggcgacgagcgcatcgctttcatcaccgagaccgagctgtacgcccaggccgtgcgccgc
agcggccgccgcaagcaggaacaggccaccgccgtcgatgccatggtgcgcgacctggcc
gaactgaagatcggcgacccggtggtgcacagcgagcacggcatcggccgctaccagggc
ctggtctcgatcgacatgggcaacggcgaggaagagttcctgcacctggactatgacaag
ggcagcaagctctacgtaccggtgcatcagttgcacgtgatctcgcgctactccggcgcc
gatccggacaccgcgccgctgcaccagctcggctccggccagtgggaaaaggccaagcgc
cgcgccgcgcagcagatccgcgacaccgccgccgagctgctgaacctctacgcccgccgc
gcgctgcgccagggcttcgccttcccgctcacgcccaacgactacgaggccttcgccgaa
agcttcggctttgacgaaacgcccgaccaggccgccgccatcaccgccgtgatcgccgac
atgacctcgggcaagccgatggaccggctggtgtgcggcgacgtcgggttcggcaagacc
gaggtcgcgctgcgcgccgccttcgtcgccgtgatgggcggcaagcaggtcgccatgctg
gcgccgaccacgctgctggccgagcagcactaccagaccctggccgaccgcttcgccgac
tggccggtgcgcatcgcggagatctcgcgcttcaagaacaaaaaggagatcgacgccgcc
atcgaggccatcaacgccggcaccatcgatattgtgatcggcacgcacaagctgctctcg
cccgacgtgcagttcgaccggctggggctggtcatcatcgacgaagagcaccgcttcggc
gtgcgccagaaagaggcgctcaagacgctgcgcgccgaggtcgacgtgctcacgctgacc
gccacgccgatcccgcgcacgctgggcatggcgctggaaggcctgcgcgacttctccgtg
atcgccacggcgccgcagaagcggctggccatcaagaccttcgtgcggcgcgaggaggac
agcgtgctgcgcgaggccatcctgcgcgagctcaagcgtggcggccaggtctatttcctg
cacaacgaggtcgagaccatcgagaacaagcgggccaagctggaagcgctcgtgcccgag
gcacgcgtggcggtcgcccacgggcagatgcacgagcgcgagctggagcgcgtgatgcgc
gatttcgtcgcccagcgcgccaacatcctgctgtgcacgaccatcatcgagaccggcatc
gacgtgccgaccgccaacaccatcctgatccaccgcgccgacaaattcggcctggcgcaa
ttgcaccagctgcgcggccgcgtcgggcgctcccaccaccaggcctatgcctacctgctg
gtgcacgatgcggaggggctgaccaagcaggcccagcgccggctggaggccatccagcag
atggaggagctcggctccggcttctacctggcgatgcacgacctggagatccgcggcgcg
ggcgaggtgctgggcgacaagcaatcgggcgagatttccgagatcggcttccagctctac
accgacatgctcaaccaggcggtcaagtcgctcaaggccggcaaggagcccgacctgatg
gcgccgctggcggccaccaccgagatcaacctcggcacccccgccctgctgcccagcgac
tactgcggcgacgtgcaggagcgcctgtcgctgtacaagcgcctggccaactgcgaatcc
ggcgagaccatcgacaacatccaggaagaactgatcgaccgcttcggcaagctgccgccg
caggcgcaatccctgatcgagacgcatcgcctgcgcatcgccgcggtgccgctgggtatc
cgcaagatcgacaccggcgccgatgccgtcacgctgcagttcgtgccgaacccgccggtc
gacgccatcaagatcatcgacctggtgcagaagaaccgccagatcaagctggccggccag
gaccgcctgcgcatcgaaaacatccccaccgagaccgctgcgctggcgcaggccatccgc
cacaccatgcggcaactggcctga
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