Ralstonia solanacearum CFBP2957: RCFBP_20893
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Entry
RCFBP_20893 CDS
T01272
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rsc
Ralstonia solanacearum CFBP2957
Pathway
rsc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RCFBP_20893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsc03400
]
RCFBP_20893
Enzymes [BR:
rsc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RCFBP_20893
DNA repair and recombination proteins [BR:
rsc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RCFBP_20893
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
CBJ44073
LinkDB
All DBs
Position
2833756..2836368
Genome browser
AA seq
870 aa
AA seq
DB search
MPGPLDAYRRQRDFSQTREPGGKRRATGRRGNGTLRYVIQKHDATHLHYDFRLELDGTLK
SWAIPKGPSLDPADKRLAVHVEDHPLDYADFEGHIPEGQYGAGDVIVWDRGTWRPHGDAR
AAYRAGKLKFDLDGEKLHGAWTLVRTRLPGSGRHPKEQWLLIKERDAQVRPSGEYDITQA
LPASVISGREVEGDPPAPQPASQMPAPTTPAADAVRPPAGAVPAPLPAALEPQLATLVGT
PPTSGTWDYEAKFDGYRILARIDGDRVQLFSRNGHDWTARLPRQARALPALGLRNAWLDG
EAVVMNAAGVPDFQALQNAFETAHLERIRYVLFDLPYCNGMDLRGVPLRERRALLERIIG
AASDALDHKAIAFSNRLDAPPGPLLASACRLSMEGIIGKRADAPYHAGRSRAWIKLKCGR
RQAFVIGGYSAPKGSRSSLGALLLGVYDDDGALRYAGRVGTGFNQASLRALHAELRGLRT
DRPPFADPPAGAGARDVRWVRPERVAEVAFAQWTREGIVRQAVFQGLRDDKPARGIVRES
ANRASAGSRPNGPDPDDPASAAQPARRTRPGAERIAGVDITHPDRVIETASGTTKADLAR
YYAAIADWILPHLRNRPVALLRAPDGIDGEHFFQKHIAAPQIPGITRLDPSLDPGHASLL
TIDSVEALIGAVQMGAVEFHTWNARADRIEQPDRIVFDIDPDPALPFARVIEATQLTLAL
LDELGLRAFLKTSGGHGLHVVVPLARRASAGWDTLKAFAQAVTQHLARTIPARFAARMGP
QNRIGKTFVDYLRNHRGASTVAAGSVRARPGLPVSVPIARDELAGLHSAAQWNLRTLPDR
LATLKADPWADYARTRQSVTADMRRRIGLG
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgcccggaccgctcgacgcctaccgccgccagcgcgatttctcgcagacccgcgaaccc
ggcggcaagcgccgcgccaccggccggcgcggcaacggcaccctgcgctacgtgatccag
aagcacgacgccacgcacttgcactacgacttccgccttgagctggacggcacgctcaag
agctgggccatccccaagggcccgagcctggacccggccgacaagcgcctcgccgtgcat
gtggaagaccatccgctcgactacgcggacttcgagggccatatccccgagggccagtac
ggcgccggcgatgtgatcgtctgggaccggggcacttggcgcccgcacggcgacgcacgc
gccgcctaccgcgccggcaagctgaagttcgacctcgacggcgagaagctgcacggcgcc
tggaccctggtgcgcacgcgcctgcccggcagcggccggcacccgaaggagcaatggctg
ctgatcaaggagcgcgacgctcaggtccggccatccggcgaatacgacatcacgcaggcg
ctgccggccagcgtcatcagcggcagggaggtcgaaggcgacccgcccgcgcctcaaccg
gcatcgcagatgcccgcgccgaccacgccggccgccgacgccgtgcggccgcctgccggc
gccgtccccgcgccgctgcccgccgcgctggagccgcagctcgccacgctggtcggcacc
ccgcccacctcgggcacgtgggactacgaagccaagttcgacggctaccgcatcctcgcg
cgcatcgacggcgaccgcgtgcaactgttcagccgcaacgggcacgactggaccgcccgc
ctgccacgccaggcacgcgcgctgcccgcgctggggctgcgcaacgcctggctggacggc
gaggcggtggtgatgaacgcagccggcgtgccggatttccaggcgctgcagaacgctttc
gagaccgcgcacctggagcgcatccgctacgtcctgttcgacctgccgtactgcaacggc
atggacctgcgcggcgtgccgctgcgcgagcggcgcgcgctgctggagcgcatcatcggg
gcggcgtccgatgcgctcgaccacaaggccatcgcgttctccaaccggctggatgcgccg
cccggcccgttgctggcctcggcctgccgcctgtcgatggagggcatcatcggcaagcgc
gccgacgcgccctaccacgctggacgcagccgggcctggatcaagctcaagtgcggccgg
cgccaggcattcgtcatcggcggctacagtgcgcccaagggcagccgcagcagcttgggc
gcactgctgctgggcgtgtatgacgatgacggtgcgctgcgctacgccggacgggtcggc
accggattcaaccaggccagcctgcgcgcgctgcacgcagaactgcgcggactgcgcacg
gaccgcccgcccttcgccgacccgcccgccggcgccggcgcgcgcgacgtgcggtgggtg
cggcccgagcgcgtggccgaagtcgccttcgcccaatggacgcgcgaaggcatcgtgcgg
caggccgtcttccagggcctgcgcgatgacaaacccgcgcgcggcatcgtgcgggagagc
gcgaaccgcgccagcgccgggtcccgcccgaacggccccgacccggacgatcccgcatcc
gcagcgcagcccgcgcgccggacgcgcccgggtgccgagcgcatcgccggtgtcgacatc
acgcatccggaccgcgtcatcgaaacagcgagcggcaccaccaaggccgacctcgcgcgc
tactacgccgccatcgcggactggatcctgccgcacctgcgcaaccggccggtggccctg
ctgcgcgcgccggacggcatcgacggcgagcacttcttccagaagcacatcgccgcgccg
cagatccccggcatcacccgactcgacccctcgctcgatcccgggcatgcgtcgctgctg
acgatcgattcggtggaggcgctgatcggcgcggtgcagatgggcgcggtggaattccac
acctggaatgcgcgggccgatcgcatcgagcagcccgaccgcatcgttttcgacatcgac
cccgaccccgcgctgccgttcgcgcgcgtgatcgaggccacgcagttgacgctggcgctg
ctcgacgagctgggcctgcgcgccttcctgaagaccagcggcggccacggcctgcacgtg
gtggtgccgctcgcgcggcgcgcgtcggccggctgggacacgctcaaagccttcgcgcag
gccgtgacgcaacacctggcccgcaccattccggcccgcttcgccgccaggatggggccg
cagaaccgcatcggcaaaacgttcgtcgactacctgcgcaaccaccgcggcgccagcacg
gtagcggcaggctcggtgcgggcgcggcccggcctgccggtctccgtaccgatcgcgcgc
gatgagctggcggggctgcattcggccgcgcaatggaacctgcgcacactgccggatcgc
ctcgccaccctgaaggcagacccctgggccgactacgcccgcacccggcaatcggtgacg
gccgacatgcggcgccgcatcggtctcggctga
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