Candidatus Endomicrobium trichonymphae Rs-D17: TGRD_427
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Entry
TGRD_427 CDS
T00755
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rsd
Candidatus Endomicrobium trichonymphae Rs-D17
Pathway
rsd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TGRD_427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsd03400
]
TGRD_427
Enzymes [BR:
rsd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TGRD_427
DNA repair and recombination proteins [BR:
rsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TGRD_427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
SNF2-rel_dom
Flavi_DEAD
AAA_22
YcxB
Motif
Other DBs
NCBI-ProteinID:
BAG13910
UniProt:
B1H078
LinkDB
All DBs
Position
627663..630809
Genome browser
AA seq
1048 aa
AA seq
DB search
MNKIYLSGIGGSGKAHYLFRRISEMRSSIGGDINEVSDFRMFAFVKDEELSSFYDDLHSF
FNSAFHTPQDCELDVPVVKSSHSAPDIFILPSDNMQQRTFATDKIKNLKSFIVCATDISI
NSPVLDSKNNIGINVAQNQKCDFSNLVTSLSSFGYTRTSFVEDKLQFAVRGEIIDVWTVA
GEMPVRILFKYNTVEAIRVFDPESQLSNVFISEIKILPVSFSECNSTIKDYFDINDKENT
MLYFDYLIGEEAEKSFDKYELIINDPLNAISQYQGYKSFTGFQGNVNLFFNSLKDFAEND
VKIKIYCANDSDRERISDLFYENRWNYKNPEFLYGSLSRGFYLENAKVTCISSREMLYKK
KPVSFPKIRGGSRLEGIWEILAGDYVVHEKYGIGRYIGLKTISRENSISEYLCIEYKNGD
KLYIPPEQIKTIKKYIGVEGVKPKLYSMDTLAWERVKSRAREAAAKFAEELLKLYVQRSL
IKRKPFGPGTAWEKELENTFPYDETPGQLKAIEDIKNDFLKPYPMERLVCGDVGYGKTEV
VVRAAFKAVHESMQTAILVPTTVLAQQHYNTFCDRLSPFPIKVAVLSRFQTKAKQKEITQ
DLENGLIDIIIGTHRLLQKDVKFKNLGLLVIDEEHRFGVKQKEKIKSMKKNIDILMLSAT
PIPRTLSSSLSGFRDLSVIETPPFGRLPIETSISLYDENLIKNIIEAELSRNGQVFYVYN
KIETILTKAASIRELVPGIKLGIIYGQMKAKDIEEIMWKFINMELDVLLATTIIESGLDI
PSVNTMIIEEVENFGLSQLYQLRGRIGRDRKKAYCYLFYKDKTLSDEAVKRLEAIREFGE
LGSGFRLALKDLEIRGAGGILSSSQHGFVRDIGYDMFAKLLEEEGKKVKGDAVESQEKKN
TVIDLQINALIPPTYIEGEDIRILFYRKLSNAQNIKAIENIKNELLDRFGKIPNETQMLF
EITNLRLTAEKLDIERIAEDNNYIYLYFSRKADFSKADITKLTNDYSRIIEFITGKYYAF
KLKKDMIDTNTVEYLEKFLSCLVFYIRT
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
ttgaataaaatctatttatcaggaattggtggcagcggtaaagcccattatttatttaga
cgcatatccgaaatgcgaagcagcatcggtggtgatattaatgaagtttcggattttcgg
atgtttgcttttgtcaaagatgaggaactcagttctttttatgacgatttgcattctttt
tttaattccgctttccatacacctcaggactgtgaactcgatgttcctgtcgttaaatct
tcgcactctgctcctgatatctttattctcccttcagacaacatgcagcagagaactttc
gcgacagacaaaataaaaaatctaaaaagttttattgtgtgcgctacggacatttcaatt
aattctccagtactagattccaaaaacaatatcggtattaacgttgcacaaaatcaaaaa
tgtgatttcagcaatttagtgacatctctttcctcttttggttacacaagaacaagcttt
gttgaagacaaactgcaatttgcggtaagaggcgaaataatagatgtttggactgtcgca
ggtgagatgcctgtcagaatactttttaaatataatacagtcgaagccataagagttttt
gatccggaaagtcagctttcaaatgtttttatcagcgaaatcaaaatactacctgtcagt
ttttcagaatgcaattcgacaatcaaagactattttgacatcaatgacaaagagaacacc
atgttgtattttgattatctgattggtgaagaagcggaaaaatcatttgataaatatgaa
cttatcataaacgatccattaaatgccatatcgcagtatcagggttataaaagttttacg
ggattccaaggcaatgtaaatcttttttttaattcccttaaagattttgccgaaaatgat
gtaaaaataaaaatttactgtgcaaacgatagcgaccgcgaacgtatttcagacctattt
tacgaaaaccgctggaattataaaaatcctgaatttttatatggcagtctgtcgcgggga
ttttatttggaaaatgcaaaagttacatgtatttcaagccgcgaaatgctttataagaaa
aagcctgtaagttttccaaaaataagggggggcagtcgtttagagggtatttgggaaata
ttggcgggcgactatgtagttcatgaaaaatacggaattgggcgttatataggacttaaa
accatttcaagagaaaacagcatctcggaatatttatgcatagaatataaaaacggcgat
aaactctatatcccgccagaacaaataaaaaccataaaaaaatatatcggcgttgagggc
gttaaacctaaactgtattctatggatacgctcgcatgggaaagagtaaaatcaagagcg
cgcgaagccgctgcaaaatttgcggaagaacttttaaaactttatgttcaaagaagcttg
ataaaaagaaaaccttttggtccggggacggcatgggaaaaagaacttgaaaatacattt
ccttacgatgaaacgcctggccaactaaaagctattgaagacataaaaaacgattttctt
aaaccctaccccatggaaaggcttgtctgtggtgatgttggatacggcaaaacggaagtt
gttgtgcgtgctgcatttaaagcagttcatgaaagcatgcagactgccattttagttcct
accactgttctggcacagcagcattacaatactttctgtgacaggctttctccttttccg
ataaaagtcgctgtgcttagtagatttcagactaaagcaaaacaaaaagagataactcag
gatttggaaaacggactgattgatattataatcggaacacacagacttttacaaaaagac
gtgaaatttaaaaatttgggtttattggtaattgacgaagaacacaggttcggcgtaaag
cagaaagaaaagattaagtcaatgaaaaaaaatattgatattttaatgctttcggcaact
cctattcccagaactttatcttcgtcgttatcgggttttagagacttgtcggtaatagaa
actccgccgtttggcagactgcctatagagacaagtatttcgttatatgacgagaatcta
attaaaaatattattgaagcggaactttcaagaaacggtcaggttttttatgtttataat
aaaattgaaacaattcttacaaaagctgcaagtatcagagaacttgtgccgggcataaaa
cttgggatcatatacggtcagatgaaagcaaaagatattgaagaaattatgtggaaattt
ataaatatggaattggatgttttgctggcgacgacaataatagaatccggcttggatata
ccgtcggttaacacgatgataattgaagaagtggaaaatttcggactttcacagctttac
cagttaagaggcagaataggcagagacagaaaaaaagcgtactgttatttattttataaa
gacaagactttgagcgatgaagccgttaaaagactcgaagctattagagaatttggcgaa
ttgggatcgggttttagacttgctcttaaagatctggaaataagaggagcaggtggcata
ctttcttcaagtcaacacggttttgtaagggatataggttacgatatgtttgcaaaactc
cttgaagaagaggggaaaaaagttaaaggagatgcggttgaatcgcaagaaaaaaagaac
actgtaatagatttgcagattaatgcgttaattccacctacatatattgaaggcgaagat
ataagaattttattttatagaaaactttctaatgcgcagaatatcaaagcgatagaaaat
ataaagaacgaacttcttgaccgtttcggaaaaattccgaatgaaacacaaatgttattt
gagataacgaatttaagacttactgctgaaaaacttgatattgaaagaatagctgaagat
aataattatatatacctatatttttcgcgaaaagcagatttttcaaaagcagacataacc
aaacttacaaatgattattcaagaataatagaatttataacaggtaaatattatgcattt
aaattaaaaaaagatatgattgatacaaatactgtagaatatctcgaaaaattcctgtcc
tgccttgtattttatatacgaacttaa
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