Ralstonia pseudosolanacearum FQY_4: F504_2174
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Entry
F504_2174 CDS
T02751
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rse
Ralstonia pseudosolanacearum FQY_4
Pathway
rse02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rse00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
F504_2174 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rse03021
]
F504_2174 (rpoD)
Transcription machinery [BR:
rse03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
F504_2174 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
KIND
GSH-S_ATP
Motif
Other DBs
NCBI-ProteinID:
AGH84688
LinkDB
All DBs
Position
complement(2341264..2343723)
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AA seq
819 aa
AA seq
DB search
MPEKTGKAQPSKTAEISAAAKPAPRVKGAIQSSTSGKVSTSMSTSARPGGKEAASVALKG
KTTTVAKSKITEVESKESAASARAAKTGTARTSTAKPNKAADADTKRTVREAEAIPTPTS
PAPRAEAAAEPKKRGRKPRAGAQADDESSTDVTEEFDEAPAAPAPKSDKQKARDRKAKEK
ALLKEFAATQQGGSEEELEARRQKLKALIKLGKSRGYLTYAEINDHLPDDMVDAESMDTL
VATLNDIGIAVYEQAPDAETLLLNDNAPSVTTEEEAEEEAEAALSTVDSEFGRTTDPVRM
YMREMGTVELLTREGEIEIAKRIEAGLKDMVMAISACPVTISEILAMGERVANDEAKIDE
YIDGLIDPNADAAEAAQAGDEDEDFEDEDADESGDEEEDEDDDGSGSSAASARQLEELKQ
AALAKFAIIGDQFEKMRRAFEKEGYKSKPYLKAQEAIQNELMTIRFTARNVERLCDTLRG
QVDEVRKLERAILNIVVDKCGMSRGDFVSRFPGNETNLGWINTVVADGKPYSAIVERNIP
AVHELQQKLIDLQARVVLPLAELKDVNKKMSEGERRAREAKREMTEANLRLVISIAKKYT
NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH
MIETINKMNRISRQILQETGNEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDD
DSHLGDFIEDTNTLAPAEAALHGSMRGVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEE
VGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGS
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
gtgccggaaaaaacgggaaaagcccagccgagcaagaccgccgagatttccgccgccgcc
aagccggcaccgcgcgtgaagggcgcgatccaatcttcaacctcaggcaaggtctcgacg
tcgatgagcacgagcgccagacctggcggcaaagaagccgcttccgtcgcactcaagggt
aagacaaccaccgtggcgaaatcgaagatcaccgaagtcgagagcaaagagtccgctgcc
agcgcacgcgcagccaagaccggtaccgctcgtaccagcaccgcaaagccgaacaaggcc
gcggatgcagacaccaagcgcaccgttcgcgaggcagaggccatccccaccccaacttct
cctgcaccccgcgccgaggccgcggccgagcccaagaagcgcggccgcaagccccgtgcc
ggggcgcaggcagacgacgaaagcagcacggacgtgactgaagaatttgacgaagcaccc
gccgctccggcacccaaatccgacaagcagaaggcccgcgaccgcaaggccaaggaaaaa
gccctgctgaaggagtttgccgcaacgcagcaaggcgggtcggaagaagagctcgaggca
cgccgccagaagctcaaggcgctgatcaagctgggcaaatcgcgcggctacctgacctac
gccgaaatcaacgaccatctgcccgacgacatggtcgacgcagagtcgatggacacgctg
gtcgccacgctcaacgacatcggcatcgccgtgtacgagcaggccccggacgccgagacc
ctgctgctcaacgacaacgcgccttccgtgaccacggaagaagaggcggaagaggaagcc
gaagccgcgctgtccacggtcgactccgaattcggccgcacgaccgacccggtgcgcatg
tacatgcgcgagatgggcacggtcgagctgctcacccgcgaaggcgaaatcgagatcgcc
aagcgcatcgaggccggcctgaaggacatggtcatggccatctcggcctgcccggtcacc
atctccgagatcctcgccatgggcgagcgcgtggccaacgatgaggccaagatcgacgag
tacatcgacggcctgatcgacccgaacgccgacgccgccgaagccgcgcaggccggcgac
gaggacgaagacttcgaggacgaagacgccgacgagagcggcgacgaagaggaagacgag
gacgacgacggctcgggcagctcggccgcatccgcgcgccagctcgaagagctcaagcag
gccgcgctggcgaagttcgccatcatcggcgaccagttcgagaagatgcgccgcgccttc
gagaaggaaggctacaagtccaagccgtacctgaaggcgcaggaagccatccagaacgag
ctgatgacgatccgcttcacggcacgcaatgtcgagcgcctgtgcgacacgctgcgcggc
caggtcgacgaggtgcgcaagctcgagcgcgcgatcctgaacatcgtggtcgacaagtgc
ggcatgtcgcgtggcgatttcgtctcgcgtttccctggcaacgaaaccaacctcggctgg
atcaacacggtggtcgccgacggcaagccgtacagcgccatcgtcgagcgcaacatcccg
gccgtgcacgagctgcagcagaagctgatcgacctgcaggcgcgcgtggtgctgccgctg
gctgagctcaaggacgtcaacaagaagatgtccgaaggcgagcgccgcgcccgcgaggcc
aagcgcgagatgaccgaggccaacctccgtctggtgatctccattgccaagaagtacacc
aaccgcggtctgcagttcctcgacctgatccaggaaggcaacatcggcctgatgaaggcg
gtggacaagttcgaataccgccgcggctacaagttctcgacgtacgccacgtggtggatc
cgccaggccatcacgcgctcgatcgccgaccaggcgcgcaccatccggattccggtgcac
atgatcgagacgatcaacaagatgaaccgcatctcgcgccagatcctgcaggaaaccggc
aacgagccggatccggcgacgctggccgagaagatggagatgccggaagacaagatccgc
aagatcatgaagatcgccaaggagccgatctccatggaaacgccgatcggtgacgacgac
gactcccatctgggcgacttcatcgaggacaccaacacgctggccccggctgaagcggcg
ctgcatggctccatgcgcggcgtggtgaaggacgtgctcgactcgctgacgccgcgcgaa
gccaaggtgctgcgcatgcgcttcggcatcgagatgagcacggaccacacgctggaagag
gtcggcaagcagttcgacgtgacccgcgagcgtatccgccagatcgaagcgaaggcgctg
cgcaaactgcgccacccgagccgttcggacaagctgaagagcttcctcgaggggagctga
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