Ralstonia syzygii subsp. celebesensis: JK151_05510
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Entry
JK151_05510 CDS
T07219
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rsg
Ralstonia syzygii subsp. celebesensis
Pathway
rsg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rsg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JK151_05510 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsg03400
]
JK151_05510 (ligD)
Enzymes [BR:
rsg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JK151_05510 (ligD)
DNA repair and recombination proteins [BR:
rsg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JK151_05510 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QQV56439
LinkDB
All DBs
Position
1185751..1188360
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AA seq
869 aa
AA seq
DB search
MPGPLDAYRRKRDLSQTREPAGERRATGQRSDGALRYVIQKHDATRLHYDFRLELDGTLK
SWAIPKGPSLDPADKRLAVHVEDHPLDYADFEGHIPEDQYGGGDVIVWDRGTWRPHGDAH
AAYRAGKLKFDLDGEKLHGAWTLVRTRLPGSGRHPREQWLLIKERDDQVRPSSAYDITQA
LPASVISGRDVGGGPPAQNAVPTATAPEPSRRTVDPPAGAVAAPLPATLEPQLATLVGTP
PASGTWDYEAKFDGYRILARIDGDSVQLFSRNGCDWTARLPRQARALPALGLRSAWLDGE
AVVVNEQGVPDFQALQNAFETAHMERIRYVLFDLPYCNGVDLRGVPLRERRALLERIVEA
APGALDREAIAYSARLDAPPSQLLASACGMSMEGIIGKRADAPYRSGRGPTWIKLKCGQR
QAFVIGGYSAPKGSRSGFGALLLGVYADDGALRYAGRVGTGFNQASLRALHAELRGLHTD
RPPFADPPTGADARDVQWVRPERVAEIAFAEWTREGIVRQAVFQGLRDDKPARSIVRETA
GTVGTAPRSTGHDVSARPPAARPARTGRPGAERIAGVDITHPDRIIEKASGTTKADLARY
YASIADWLLPHLRNRPVALLRAPDGIDGEHFFQKHIGALQISGITQLDPALDPGHASLLT
IDSVAALIGAVQMGVVEFHTWNALADRIEQPDRIVFDIDPDPALPFARVIEATQLTLALL
DELGLRTFLKTSGGRGLHVVVPLARRTPAGWEMLKAFAQAVTQHLAHTLPDRFAAKMGPQ
NRIGKTFVDYLRNNRGASTVAACSVRARPGLPVSVPIAHDELAGLHSAAQWNLRTLPDRL
AALQADPWAGYAGTRQSVTAGMRRRIGLD
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgcccggaccgctcgacgcctaccgccgcaagcgcgacctctcgcagacccgggagccc
gccggcgagcgccgcgccaccggccagcgcagcgacggcgccctgcgctacgtgatccag
aagcacgacgccacgcgcctgcactacgacttccgcctggaactggacggcacgctcaag
agctgggccatccccaagggcccgagcctggacccggccgacaagcgcctcgccgtgcat
gtggaagatcatccgctcgactatgcggacttcgaaggccatatccccgaagaccagtac
ggcggcggcgacgtgatcgtctgggaccgcggcacctggcgcccgcacggcgacgcgcac
gccgcctatcgcgccggcaagctgaagttcgatctcgacggcgagaagctgcacggcgcg
tggacactcgtgcgcacgcgcctgcccggcagcggccggcacccgagggagcaatggctg
ctgatcaaggagcgtgacgatcaggtcaggccatccagcgcatacgacatcacgcaagcc
ctgcccgccagcgtgatcagcggcagggatgtcggaggcggcccgcccgcgcaaaacgcg
gtgccgaccgccacggcccccgaaccgtcccgccgcacagtcgacccgcccgccggtgcc
gtcgcggccccgctgccggcgacgctggagccgcagctcgccacgctggtcggcaccccg
cctgcctcgggcacatgggactacgaagccaagttcgacggttaccgcatcctcgcgcgc
atcgacggcgacagcgtgcagctgttcagccgcaacgggtgcgactggactgcccgcctg
ccccgccaggcacgcgcactgcccgcgctggggctgcgcagcgcctggctggacggcgag
gcggtggtggtaaacgaacagggcgtgccggatttccaggcactgcagaacgccttcgag
accgcgcacatggagcgcatccgctacgtcctgttcgacctgccgtattgcaacggcgtg
gacctgcgcggcgtgccgctgcgcgagcggcgtgcgctgctggagcgcatcgtcgaggcg
gcgcccggtgcgctcgaccgcgaggccatcgcttattctgcccggctggacgcgccgccc
agccagttgctggcctcagcgtgcggcatgtcgatggagggcatcatcggcaagcgcgcc
gatgcaccgtaccgctcgggacgcggcccgacctggatcaagctcaagtgcggccagcgg
caggcattcgtcatcggcggctacagcgcgcccaagggcagccgcagcggcttcggcgcg
ctgctgctgggcgtgtacgccgacgacggcgcgctgcgctacgccggacgggtcggcacc
ggattcaaccaggccagcctgcgcgcgctgcacgcggaactgcgcgggctgcacacggac
cgcccgcccttcgccgacccgcccaccggcgccgacgcgcgcgacgtgcaatgggtccgg
cccgagcgcgtggccgaaatcgccttcgccgaatggacacgggaaggcatcgtgcggcag
gcggtcttccagggcctgcgcgacgacaagccggcgcgcagcatcgtgcgtgagaccgca
ggcactgtcggcaccgcaccccgctcaacaggacacgacgtaagcgcccgccctcccgca
gcacgccccgcgcgcacggggcgcccgggcgccgaacgcatcgccggagtcgacatcacg
cacccggaccgcatcatcgagaaagcgagcggcaccaccaaggccgacctcgcccgctac
tacgccagcatcgcagactggctcctgccgcatctgcgcaaccggccggtggccctgctg
cgcgcgccggacggcatcgacggcgagcacttcttccagaagcacatcggcgcgctgcag
atctccggcatcacccagctcgacccggcgctcgatcccgggcacgcgtcgctgctgacg
atcgattcggtggcggcgctgatcggcgcggtgcagatgggcgtggtggaattccacacc
tggaatgcgctggccgatcgcatcgagcagcccgaccgcatcgtcttcgacatcgacccc
gaccccgcgctgccgttcgcgcgcgtgatcgaggccacgcagctgacgctggcgctgctc
gacgaactgggcctgcgcaccttcctcaagaccagcggcggccgcggcctgcatgtggtg
gtgccgctcgcgcggcgcacgccggccggctgggagatgctcaaagccttcgcgcaggcc
gtgacacagcacctggcccacaccctcccggaccgcttcgccgccaagatggggccgcag
aaccgcatcggcaaaacctttgtcgactacctgcgcaacaaccgcggtgccagcacggtg
gcggcctgctcggtgcgggcgcggcccggcctgccggtgtcggtgccgatcgcacacgat
gaactggccggcctgcactcggccgcgcaatggaacctgcgcacgctgccggatcgcctc
gccgcgctgcaggccgacccctgggcaggttacgcgggcacccggcaatccgtgacggcc
gggatgcggcgccgcatcggtctcgactga
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