Ralstonia syzygii subsp. celebesensis: JK151_06225
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Entry
JK151_06225 CDS
T07219
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rsg
Ralstonia syzygii subsp. celebesensis
Pathway
rsg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rsg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JK151_06225 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsg03400
]
JK151_06225 (mfd)
Enzymes [BR:
rsg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JK151_06225 (mfd)
DNA repair and recombination proteins [BR:
rsg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JK151_06225 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
AAA_30
ERCC3_RAD25_C
SNF2-rel_dom
MRP-S22
Motif
Other DBs
NCBI-ProteinID:
QQV56558
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All DBs
Position
complement(1341201..1344632)
Genome browser
AA seq
1143 aa
AA seq
DB search
MSDLSLSALPIVKPGQRFVFSGLQGSADALLLARYLEQHRGTVPMLAVVCANAVDAQRLA
EELRWFAPQARVKLLPDWETLPYDNFSPHQDLISERLATLHDLQGGACDILLVPASTALQ
RIAPPSFLAAYTFFFKKGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMG
SPMPYRLDLFGDEIDTIRAFDPDTQRSLYPVNEVRLLPGREFPMDEAARTAFRGRWREVF
EGDPTRAPIYKDIGNGVPSAGIEYYLPLFFETTATLFDYLPAGVHLALVGDIEGAVRRFW
ADTTQRYNFMRHDRDRPLLAPSALYLDEEAFFIAAKPHARLVLRAEPGDAPLSLPLPNVA
VNRRAEDPLVNLESFLMHGNCRVMICAESAGRRETLAQMLAASGLHPEGVTDCADLVGGD
ARFVLGVAPLYQGFILGDERIAFITETELYAQAVRRGGRRKQEQATAVDAMVRDLAELKI
GDPVVHSEHGIGRYQGLVSIDMGHGEEEFLHLDYDKGSKLYVPVHQLHVISRYSGADPDT
APLHQLGSGQWEKAKRRAAQQIRDTAAELLNLYARRALRQGFAFPLTPNDYEAFAESFGF
DETPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTT
LLAEQHYQTLADRFADWPVRIAEISRFKNKKEIDAAVEAINAGTIDIVIGTHKLLSPDVK
FDRLGLVIIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATA
PQKRLAIKTFVRREEDGVLREAILRELKRGGQVYFLHNEVETIENKRAKLEALVPEARVA
VAHGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRSDKFGLAQLHQL
RGRVGRSHHQAYAYLLVHDADGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVL
GDKQSGEISEIGFQLYTDMLNQAVKSLKAGKEPDLMAPLAATTEINLGTPALLPSDYCGD
VQERLSLYKRLANCESGETIDNIQEELIDRFGKLPPQAQSLIETHRLRIAAQPLGIRKID
TSADAVTLQFVPNPPVDAIKIIDLVQKNRQIKLAGQDRLRIENIPAETAALAQAIRHTMR
QLA
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatctctcgctttccgccctgccgatcgtcaaaccgggccagcgcttcgtcttc
agcggcctgcagggctcggccgatgcgctactgctggcgcgctacctggaacagcatcgc
ggcaccgtgccgatgctggcggtggtctgcgccaacgccgtcgacgcccagcggctggcc
gaagagctgcgctggttcgccccgcaggcgcgcgtgaagctgctgccggactgggagacg
ctgccatacgacaacttctcgccgcaccaggacctgatctccgaacggctggcgaccctg
cacgacctgcaaggcggggcgtgcgacatcctgctggtgccggcctccacggcgctgcag
cggatcgcgccaccgtcgttcctggcggcctatacgttcttcttcaagaagggcgagcgg
ctggatgaggcggcactcaaggcacagttcacgctggccggctacgagcacgtcagcgcc
gtgatgcgacccggcgagtacagcgtgcgcggcggcctgatcgacctgttcccgatgggc
tcgccgatgccctaccggctcgacctgttcggcgacgagatcgacaccatccgcgccttc
gaccccgacacgcagcgcagcctctacccggtaaacgaagtgcgcctgctgccgggccgc
gaattcccgatggacgaggccgcgcgcaccgccttccgcggccgctggcgcgaagtgttc
gagggcgacccgacgcgcgcgccgatctacaaagacatcggcaacggcgtgccttccgcc
ggcatcgagtactacctgccgctgttcttcgaaaccaccgccacgctgttcgactacctg
ccggccggcgtgcacctggccctggtcggcgacatcgaaggcgcggtgcggcgcttctgg
gccgacaccacgcagcgttacaacttcatgcgccacgaccgcgaccggcctctgctggcg
ccgtccgcgctgtacctggacgaggaggccttcttcatcgccgccaagccccatgcccgg
ctggtgctgcgcgccgagcccggggatgcgccgctgtcgttgccgctgcccaacgtggcc
gtcaaccgccgcgcggaagacccgctcgtcaacctcgaatcgttcctgatgcacggcaac
tgccgcgtgatgatctgcgcggaatccgccggccggcgcgagacgctggcgcagatgctg
gccgccagcggcctgcaccccgaaggcgtgaccgactgcgccgacctggtgggcggcgac
gcccgcttcgtgctcggcgtggcgccgctgtaccagggcttcatcctgggcgacgagcgc
atcgccttcatcaccgagaccgagctgtacgcccaggccgtgcgccgcggcggccgccgc
aagcaggaacaggccaccgccgtcgacgccatggtgcgcgacctggccgaactgaagatc
ggcgatccggtggtgcacagcgagcacggcatcggccgctaccagggcctggtctcgatc
gacatgggccacggcgaggaagagttcctgcacctggactacgacaagggcagcaagctc
tacgtgccggtgcatcagctgcacgtgatttcgcgctactccggcgccgatccggatacc
gcgccgctgcaccagctcggctccggccaatgggagaaggccaagcgccgcgccgcccag
cagatccgcgacaccgccgccgagctgctcaacctgtacgcccgccgcgcgctgcgccag
ggcttcgccttcccgctcacgcccaacgactatgaggccttcgccgagagcttcggcttt
gacgagacgcccgaccaggccgccgccatcgccgccgtgatcgccgacatgacctcgggc
aagccgatggaccggctggtatgcggcgacgtcggcttcggcaagaccgaagtcgcgctg
cgcgccgccttcgtcgccgtgatgggcggcaagcaggtcgccatgctggcaccgaccacg
ctgctggccgagcagcactaccagaccctggccgaccgcttcgccgactggccggtgcgc
attgccgagatctcgcgcttcaagaacaagaaggagatcgacgccgccgtcgaggccatc
aacgccggcaccatcgacatcgtgatcggcacgcacaagctgctctcgccggatgtgaag
ttcgaccggctggggctggtcatcatcgacgaggagcaccgctttggcgtgcgccagaag
gaagcgctcaagacgctgcgcgccgaggtcgacgtgctcacgctgaccgccacgccgatc
ccgcgcacactgggcatggcgctggagggcctgcgcgacttctccgtgatcgccacggcg
ccgcagaagcggctggccatcaagaccttcgtgcggcgcgaggaagacggcgtgctgcgc
gaggccatcctgcgcgagctcaagcgcggcggccaggtctacttcctgcacaacgaggtc
gagaccatcgagaacaaacgggccaagctggaggcgctcgtgcccgaggcgcgcgtggcg
gtcgcccacgggcagatgcacgagcgcgagctggagcgcgtgatgcgcgatttcgtcgcc
cagcgcgccaacatcctgctgtgcacgaccatcatcgaaaccggcatcgacgtgccgacc
gccaacaccatcctgatccaccgctccgacaagttcggcctggcgcagctgcaccagctg
cgcggacgcgtcgggcgctcgcaccaccaggcctacgcctacctgctggtgcacgatgcg
gacggcctgaccaagcaggcccagcgccggctggaggccatccagcaaatggaagaactc
ggctccggcttctacctggcgatgcacgacctggagatccgcggcgcgggcgaggtgttg
ggcgacaagcagtcgggcgagatctccgagatcgggttccagctctataccgacatgctc
aaccaggcggtgaagtccctcaaggccggcaaggagcccgacctgatggcgccgctggcg
gccaccaccgagatcaacctcggcacccccgccctgctgcccagcgactactgcggcgac
gtgcaggagcgcctgtcgctgtacaagcgcctggccaactgcgagtccggcgaaaccatc
gacaacatccaggaagagctgatcgaccgcttcggcaagctgccgccgcaggcgcaatcg
ctgatcgagacgcaccgcctgcgcatcgccgcgcagccgctcggcatccgcaagatcgat
accagcgccgacgccgtcacgctgcagttcgtgcccaacccgccggtcgatgccatcaag
atcatcgacctggtgcagaagaaccgccagatcaagctggccggccaggaccgcctgcgc
atcgagaacatccccgccgagaccgccgcgctggcgcaggccatccgccacaccatgcgg
caactggcctga
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