Richelia sinica: B6N60_01112
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Entry
B6N60_01112 CDS
T07308
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rsin
Richelia sinica
Pathway
rsin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rsin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B6N60_01112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsin03400
]
B6N60_01112
Enzymes [BR:
rsin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B6N60_01112
DNA repair and recombination proteins [BR:
rsin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B6N60_01112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_22
PsbQ
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QXE22429
UniProt:
A0A975T5E0
LinkDB
All DBs
Position
complement(1223891..1227364)
Genome browser
AA seq
1157 aa
AA seq
DB search
MAFSSIVRALVRSPLTSELTTKLNKQQELRLNGIPRLPKGLIASALASYEDRDLCVVCAT
LEEAGRVYAQMEGMGWKTVHFYPTSEASPYEPFDPENELSWGQMQVLADLVGGQSARKNT
AVIATIGALQPHLPPPSVFKSFCLTLNKGMEFDLDEFAEKITTLGYERVPLVETEGQWSR
RGDIVDVFPVSSELPVRLEWFGDEIEQIREFDPTTQRSALDKVEKISLTPTSFSPIVMAA
LKDSQQLDVLSRELNTDTEDFTNSELEGSRRFLGLAFDQPASLLDYLAENTILAIDEVEQ
CHAHSDRWVENAEEQWQLVREFQTLPKIHRSFDECLAAFNQFNTLYLSELAEENGGMNLA
SRPVPVTPHQFAKLAETIRQERERKFSVWLLSAQPSRSVSLLQEHDCPAQFIPNPRDYQA
IEKLQINRTPVAIKYSGLAELEGFVLPSFRLVVVTDREFYGQHSLASFGYIRKRRKAASK
QVDPNKLRPGDYVVHRSHGIGKFVKLESLTINNETRDYLVVQYADGLLRVAADQVGSLSR
FRCAGDKVPELHKMTGKAWDNTKNKVRKNIKKLAVDLLKLYAARSQQQGHAFPPDMPWQE
ELEDSFPYQATTDQLKAVQDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTAGKQ
VALLAPTTILTQQHYHTIKERFAPYPMNVGLLNRFRSAEEKRNILKRLATGELDIVVGTH
QLLGKSVQFRDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSLSGIR
EMSLITTPPPTRRPIQTHLAPLNPETVRSAIRQELDRGGQVFYVVPRVEGIEETTASLQQ
MIPGARIAMAHGQMDESELESTMLTFSNNDADILVCTTIIESGLDIPRVNTILIEDAHRF
GLAQLYQLRGRVGRAGIQAHAWLFYPKQRVLSDAARQRLRAIQEFTQLGSGYQLAMRDME
IRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIREIRGQEIPKVDDTQVDLNLTAFIPSEY
IPDIDQKMSAYRAVATAKSKEELKAIAGEWSDRYGTIPVPANQLLRVMELKQLAKKLGFS
RIKPENKQHIVLETPMEEPAWNLLAENLTETMRSRFVYSPGKITARGLGVFKAEQQLNSL
IDAFEKMQGAIPEAALV
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggctttttcttctattgtgcgtgctttggtgcgatcgcctctcacttcagaactcaca
accaaactcaataaacagcaggaattacggttaaatggcattccccgcttgcccaaaggt
ttaatagcttctgcattggccagttatgaagatagggatttatgcgtagtttgtgcgact
ttagaagaagctggtcgagtttacgcgcaaatggaagggatgggatggaaaactgtacat
ttttaccccacttccgaagcttcaccctatgaaccatttgacccagaaaatgaattgagt
tggggtcaaatgcaggttttggctgatttagtgggtggtcagtctgctaggaaaaatacg
gcggtaattgctactattggggcattacaaccccatttaccaccaccatccgtctttaaa
tccttttgtttgaccttaaacaaggggatggaatttgatttagatgaatttgctgaaaaa
attacgaccttaggatatgaaagagttcctttggtagaaacagaaggtcaatggagtcgc
aggggagatattgtagatgtgtttcctgtatcttccgagttacctgtgcggttggaatgg
tttggggatgaaatagaacaaattcgcgaatttgaccccacaacccaacgttctgcctta
gataaagttgagaaaatttccctgactcccactagcttttcacccattgtgatggctgca
ctgaaagatagtcaacagttggatgtattgagtagggagttaaatactgatactgaagac
tttaccaattcagaattggaaggcagcagacgttttttaggtttagcttttgatcaacct
gcgtctttattagattatttagcagaaaataccattttagccattgatgaggtagaacag
tgtcatgcccatagcgatcgctgggtggaaaatgctgaagaacaatggcaattggtcagg
gaatttcagacattaccaaaaatccatcgttcctttgatgaatgtttagccgcatttaat
caatttaatactttatatttatcagaattagctgaagaaaatggcgggatgaatctagct
agtagaccagttcccgttactccccatcaatttgctaaattagccgaaacaattcgtcaa
gaaagggaacgaaaattttctgtctggctactttctgcccaaccttcccgttctgtctca
ttattacaagaacacgattgtccagcccaatttattcctaatccccgtgactatcaagca
attgaaaaattacaaatcaaccgcactcctgtagcaattaaatattccggtttagcagaa
ttagaaggttttgttctcccttcatttcgcttggttgttgtcaccgacagagaattttac
ggtcaacattccttagctagtttcggttatatccgcaaacgtcgcaaagctgcttctaaa
caagttgaccccaataaactacgtcctggtgattatgttgtccaccgcagtcacggcatt
ggtaaattcgttaaattagaaagtctgaccattaataacgaaacccgtgattatttggtg
gtgcagtacgctgatggtttgttgagagtcgctgctgaccaagtgggttccttgtcccgg
ttccggtgtgcaggggataaagtcccagaactgcacaaaatgactggtaaggcttgggat
aataccaaaaataaagtccgcaagaatatcaagaaattagcggtagacttattgaagttg
tatgctgcgcgatcgcaacaacaaggtcatgcttttcccccagatatgccttggcaagaa
gaattagaagattctttcccctaccaagcaaccacagaccagctaaaagccgtccaagat
gtgaaacgggatatggagagcgatcgccccatggatcggttagtatgtggtgatgtaggc
tttggcaaaacagaagtagctattcgtgctattttcaaagccgtcacagcagggaaacaa
gtggcactcctcgcaccgaccaccattctcacccagcagcattaccacaccattaaagaa
cggtttgcaccatacccgatgaatgtcggtttactcaaccgtttccgcagcgcagaagaa
aagcggaatattctcaaacgtctggcaactggggaattagatatcgtggtggggacacat
caacttttaggcaaaagtgtccaattccgtgacttgggactgttagtcatagacgaagaa
caaagatttggggtcaaccaaaaggaaaaaatcaaaagtctgaaaacccaagtagacgtt
ctcaccctttctgcaactcccatcccccgcaccttatatatgtccttgtcgggaattcgg
gaaatgagtttaattaccactccaccccccacccgcagacccattcaaacccatctggca
cccctcaacccagaaactgtccgcagtgccattcgccaagaattagaccggggtggacag
gttttctatgtagtaccacgagttgaaggcattgaagaaaccacagcttccttgcagcaa
atgataccaggggcgcgtatcgctatggcccacggtcaaatggatgaaagtgagttagag
tcaaccatgctcaccttcagcaataatgatgcggatattctcgtttgtacaacaattatt
gaatctgggttagatattccccgtgtaaatactattttaattgaagatgcccaccgtttt
ggattagctcaattataccaattacgtggtcgtgtgggacgcgcaggtattcaagcacac
gcctggctattttatcccaaacaacgagtattatctgatgccgcacggcaaagattacga
gcgattcaggaatttactcaactgggttccggttatcaattagccatgcgggacatggaa
attcgcggggtgggtaatttactcggtgcagaacagtccggtcaaatggatgcaattggc
tttgatttgtacatggaaatgctagaagaagccattcgcgaaattcgtggtcaagaaatt
cccaaggttgacgatacccaagttgacctgaatttaactgcgtttattccttccgaatat
attccggatattgaccaaaagatgagtgcttacagggctgtagccactgccaaatccaaa
gaggaattaaaagccattgctggagaatggagcgatcgctatggtaccattcccgtcccg
gcaaatcaactattgcgggtgatggaattgaagcaattagcgaaaaaattaggttttagc
cgcatcaaaccagaaaataaacagcatatagtgttagaaactccgatggaagaaccagct
tggaacttactagcagagaatttaactgaaactatgcgtagtcggtttgtttattctcct
gggaaaatcacagcaagaggtttaggagtatttaaagctgaacaacagttaaatagttta
attgatgcctttgaaaaaatgcagggtgccatacctgaagctgctttagtgtga
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