Ralstonia solanacearum CMR15: CMR15_11644
Help
Entry
CMR15_11644 CDS
T02725
Symbol
mfd
Name
(GenBank) transcription-repair ATP-dependent coupling factor, helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rsm
Ralstonia solanacearum CMR15
Pathway
rsm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CMR15_11644 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsm03400
]
CMR15_11644 (mfd)
Enzymes [BR:
rsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CMR15_11644 (mfd)
DNA repair and recombination proteins [BR:
rsm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CMR15_11644 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
AAA_30
SNF2-rel_dom
ERCC3_RAD25_C
MRP-S22
Motif
Other DBs
NCBI-ProteinID:
CBJ37845
LinkDB
All DBs
Position
complement(1717209..1720640)
Genome browser
AA seq
1143 aa
AA seq
DB search
MSDLSLSALPIVKPGQRFVFSGLQGSADALLLARYLEQHRDAVPMLAVVCANAVDAQRLA
DELRWFAPQARVKLLPDWETLPYDNFSPHQDLISERLATLHDLQGGACDLLLVPASTALQ
RIAPPSFLAAYTFFFKKGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMG
SPMPYRLDLFGDEIDTIRAFDPDTQRSLYPVNEVRLLPGREFPMDEAARTAFRGRWREVF
EGDPTRAPIYKDIGNGVPSAGIEYYLPLFFETTATLFDYLPAAAHLALVGDIEGAVRRFW
ADTTQRYGFMRHDRDRPLLAPPALYLDEEAFFVAAKPYARLVLRAEPGEAPLSLPLPSVA
VNRRAEDPLVNLESFLTRGNCRVMICAESAGRRETLAQMLAASGLHPEGVADCADLMGGD
ARFVLGVAPLYQGFILGDERIAFITETELYAQAVRRGGRRKQEQATAVDAMVRDLAELKI
GDPVVHSEHGIGRYQGLVSIDMGNGEEEFLHLDYDKGSKLYVPVHQLHVISRYSGADPDT
APLHQLGSGQWDKAKRKAAQQIRDTAAELLNLYARRALRQGFAFPLAPNDYETFAESFGF
DETPDQAAAITAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTT
LLAEQHYQTLADRFADWPVRIAEISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVK
FNRLGLVIIDEEHRFGVRQKETLKTLRAEVDILTLTATPIPRTLGMALEGLRDFSVIATA
PQKRLAIKTFVRREEDGVLREAILRELKRGGQVYFLHNEVETIENKRAKLEALVPEARVA
VAHGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQL
RGRVGRSHHQAYAYLLVHDADGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVL
GDKQSGEISEIGFQLYTDMLNQAVKSLKAGKEPDLMAPLAATTEINLGTPALLPSDYCGD
VQERLSLYKRLANCESGETIDNIQEELIDRFGKLPPQAQSLIETHRLRIAAVPLGIRKID
TGADAVTLQFVPNPPVDAIKIINLVQKNRQIKLAGQDRLRIENIPAETAALAQAIRHTMR
QLT
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatctctcgctttccgccctgccgatcgtcaagcccggccagcgcttcgtcttc
agcggcctgcagggctcggccgatgcgctgctgctggcgcgctacctggaacagcaccgc
gacgccgtgccgatgctggcagtggtctgcgccaacgccgtcgacgcccagcggctggcc
gacgaactgcgctggttcgccccgcaggcgcgcgtgaagctgctgccggactgggaaacg
ctgccgtacgacaacttctcgccgcaccaggacctgatctccgagcgcctggcgacgctg
cacgacctgcagggcggcgcgtgcgacctcctgctggtgccggcctccaccgcgctgcag
cggatcgcgccgccgtcgttcctggcggcgtatacgtttttcttcaagaagggcgagcgg
ctggatgaggccgcgctcaaggcgcagttcacgctggccggctacgagcacgtcagcgcc
gtgatgcggcccggcgagtacagcgtgcgcggcggcctgatcgacctgttcccgatgggc
tcgccgatgccctaccggctcgacctgttcggcgacgagatcgacaccatccgcgccttc
gaccccgacacgcagcgcagcctgtacccggtgaacgaggtgcgcctgctgccgggccgc
gaattcccgatggacgaggccgcgcgcaccgccttccgcggccgctggcgcgaagtgttc
gagggcgacccgacgcgcgcgcccatctacaaggacatcggcaacggcgtgccctcggcc
ggcatcgagtactacctgccgctgttcttcgaaaccaccgccacgctgttcgactacctg
ccggccgccgcgcacctggccctggtcggcgacatcgaaggcgcggtgcggcgcttctgg
gccgacaccacgcagcgctacggcttcatgcgccacgaccgcgaccgcccgctgctggcg
ccgcccgccctgtacctggacgaagaggccttcttcgtggccgccaagccgtatgcccgg
ctggtgctgcgcgccgagccgggggaggcgccgctgtcgctgccgctgcccagcgtggcc
gtcaaccgccgcgcggaagacccgctcgtcaacctcgaatcgttcctgacgcgcggcaac
tgccgcgtgatgatctgcgccgaatcggccggccggcgcgagacgctggcgcagatgctg
gccgccagcggcctgcaccccgaaggcgtagccgactgcgccgacctgatgggcggcgac
gcccgcttcgtgctcggcgtggcgccgctgtaccagggcttcatcctgggcgacgagcgc
atcgccttcatcaccgagaccgagctgtacgcccaggccgtgcgccgcggcgggcgccgc
aagcaagagcaggccaccgccgtcgacgccatggtgcgcgacctggccgagctgaagatc
ggcgatccggtggtgcacagcgagcacggcatcggccgctaccagggcctggtctcgatc
gacatgggcaacggcgaggaggagttcctgcacctcgactacgacaagggcagcaagctc
tacgtgccggtgcaccagctgcacgtgatctcgcgctactcgggcgccgatcccgatacc
gcgccgttgcaccagctcggctcgggccagtgggacaaagccaagcgtaaagccgcgcag
cagatccgcgacaccgccgccgagctgctgaacctgtatgcccgccgcgccctgcgccag
ggcttcgccttcccgctcgcgcccaacgactacgagaccttcgccgagagcttcggcttc
gacgagacgcccgaccaggccgccgccatcaccgccgtgatcgccgacatgacctcgggc
aagccgatggaccggctggtgtgcggcgacgtcggcttcggcaagaccgaggtcgcgcta
cgcgccgccttcgtcgccgtgatgggcggcaagcaggtcgccatgctggcgccgaccacg
ctgctggccgagcagcactaccagacgctcgccgaccgcttcgccgactggccggtgcgc
atcgccgagatctcgcgcttcaagaacaagaaagagatcgacgccgccatcgaggccatc
aacgccggcaccatcgacatcgtgatcggcacgcacaagctgctctcgcccgacgtgaag
ttcaaccggctggggctggtcatcatcgacgaggagcatcgcttcggtgtgcgccagaag
gagaccctcaagacgctgcgcgccgaggtcgacatactcacactgaccgccacgccgatc
ccgcgcacgctgggcatggcgctggagggcctgcgcgacttctccgtgatcgccacggcg
ccgcagaagcggctggccatcaagaccttcgtgcggcgcgaggaagacggcgtgctgcgc
gaggccatcctgcgcgagctcaagcgcggcggccaggtctacttcctgcacaacgaggtc
gagaccatcgagaacaagcgggccaagctggaagcactggtgcccgaggcgcgcgtggcg
gtcgcccacggccagatgcacgagcgcgagctggagcgcgtgatgcgcgatttcgtcgct
cagcgcgccaacatcctgctgtgcacgaccatcatcgagaccggcatcgacgtgccgacc
gccaacaccatcctgatccaccgcgccgacaagttcggcctggcgcagctgcaccagctg
cgcgggcgcgtcgggcgctcgcaccaccaggcctatgcctacctgctggtgcacgatgcg
gacggcctgaccaagcaggcgcagcgccggctggaggccatccagcagatggaggagctc
ggctccggcttctacctggcgatgcacgacctggagatccgcggcgcgggcgaggtgctg
ggcgacaagcagtcgggcgagatctccgagatcgggttccagctctataccgacatgctc
aaccaggcggtgaagtcactcaaggccggcaaggaacccgacctgatggcgccgctggcg
gccaccaccgagatcaacctcggcacccccgccctgctgcccagcgactactgcggcgac
gtgcaggagcgcctgtcgctgtacaagcgcctggccaactgcgaatcgggcgagaccatc
gacaacatccaggaagagctgatcgaccgcttcggcaagctgccgccgcaggcgcagtcg
ctgatcgagacgcatcggctgcgcatcgccgcggtgccgctgggcatccgcaagatcgac
accggcgccgatgccgtcacgctgcagttcgtgccgaacccgccggtcgatgccatcaag
atcatcaacctggtgcagaagaaccgccagatcaagctggccggccaggaccgcctgcgc
atcgagaacatccccgccgagaccgccgcgctggcgcaggccatccgccacaccatgcgg
cagctgacctga
DBGET
integrated database retrieval system
