Ralstonia solanacearum Po82: RSPO_c01726
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Entry
RSPO_c01726 CDS
T02005
Symbol
mfd
Name
(GenBank) transcription-repair ATP-dependent coupling factor, helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rsn
Ralstonia solanacearum Po82
Pathway
rsn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rsn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RSPO_c01726 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsn03400
]
RSPO_c01726 (mfd)
Enzymes [BR:
rsn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RSPO_c01726 (mfd)
DNA repair and recombination proteins [BR:
rsn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RSPO_c01726 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
AAA_30
ERCC3_RAD25_C
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AEG69026
UniProt:
F6G0V8
LinkDB
All DBs
Position
complement(1795743..1799963)
Genome browser
AA seq
1406 aa
AA seq
DB search
MRRSARAPDRARCSRPSGNICGVCACHRPPRGTVSAMCCAASTRLSVSATGSARIPPTAC
PPSASTAPTSRAIKAGVSPGRAASCTSTQSYSCAPRPRSAARPLVTEAWRESPPQSTSTS
LAASKPMPGKRTASAGAPGDVTTTTRSISALARKACTVCHNIGRPAIGWYCLGRSPPARV
PVPADGISANRRRPGREETDMRKRWNGVGAAFAGEFPVGQHANGADFIIAASVTTPRPPA
LAGCRALPCRPVSPDPDVPMSDLSPPFTLSALPIVKPGQRFVFSGLQGSADALLLARYLE
QHRATAPMLAVVCANAVDAQRLADELRWFAPQARVKLLPDWETLPYDNFSPHQDLISERL
ATLHDLQGGACDLLLVPASTALQRIAPPSFLAAYTFFFKKGERLDEAALKAQFTLAGYEH
VSAVMRPGEYSVRGGLIDLFPMGSPMPYRLDLFGDEIETIRAFDPDTQRSLYPVNEVRLL
PGREFPMDEAARTAFRGRWREVFEGDPTRAPIYKDIGNGVPSAGIEYYLPLFFEETATLF
DYLPATAHLALVGDIEAAVRRFWADTTQRYNFMRHDRDRPLLAPPALYLDEEAFFVAAKP
HARLVLRAEADDAPLSLPLPNVAVNRRAEDPLVNLEAFLMRGNCRVMICAESAGRRETLA
QMLAASGLHPEGVADCADLMGGEARFVLGVAPLYQGFILGDERIAFITETELYAQAVRRS
GRRKQEQATAVDAMVRDLAELKIGDPVVHSEHGIGRYQGLVSIDMGNGEEEFLHLDYDKG
SKLYVPVHQLHVISRYSGADPDTAPLHQLGSGQWEKAKRRAAQQIRDTAAELLNLYARRA
LRQGFAFPLTPNDYEAFAESFGFDETPDQAAAITAVIADMTSGKPMDRLVCGDVGFGKTE
VALRAAFVAVMGGKQVAMLAPTTLLAEQHYQTLADRFADWPVRIAEISRFKNKKEIDAAI
EAINAGTIDIVIGTHKLLSPDVQFDRLGLVIIDEEHRFGVRQKEALKTLRAEVDVLTLTA
TPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDSVLREAILRELKRGGQVYFLH
NEVETIENKRAKLEALVPEARVAVAHGQMHERELERVMRDFVAQRANILLCTTIIETGID
VPTANTILIHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDAEGLTKQAQRRLEAIQQM
EELGSGFYLAMHDLEIRGAGEVLGDKQSGEISEIGFQLYTDMLNQAVKSLKAGKEPDLMA
PLAATTEINLGTPALLPNDYCGDVQERLSLYKRLANCESGETIDNIQEELIDRFGKLPPQ
AQSLIETHRLRIAAVPLGIRKIDTGPDAVTLQFVPNPPVDAIKIIDLVQKNRQIKLAGQD
RLRIENIPTETAALAQAIRHTLRQLA
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgttcggccagggcccccgacagggcgcgctgcagcaggccgagcggaaacatc
tgcggcgtctgcgcctgccacaggccgccgcgcggcacggtctcggcgatgtgctgcgcg
gcatcgacccgcttgagcgtatcggccaccggcagcgccaggataccgccgaccgcctgc
ccgccgtcggcctcgacggcgccgaccagccgcgcgatcaaggcgggcgtgagcccgggg
cgcgcggcatcgtgcacgagcacccagtcgtattcctgcgcgccgaggccgcgcagcgcc
gccaggccgttggtgaccgaggcgtggcgcgaatcgccgccgcaatcgacctccaccagc
ctggccgcatcgaagcccatgccgggaaaacgcaccgccagcgccggcgcgcccggcgat
gtcaccaccaccacccggtcgatctccgcactggccaggaaggcctgcacggtatgccac
aacatcgggcggccggcgatcggctggtactgcttgggcagatcgccgccggcgcgcgtg
ccggtgccggcggacgggatcagtgcgaaccggcgtcggccgggacgggaggaaacggac
atgcggaagcggtggaatggcgtgggcgcggcctttgccggggaatttcccgtcggccag
cacgcgaatggcgcggattttataatagcggccagtgtcacgacaccccgcccgcccgcg
ctggcggggtgtcgcgctttaccttgccgaccggtttcccctgaccccgacgttcccatg
tccgatctctcgccgccttttaccctgagtgccctgcccatcgtcaagccgggccagcgc
ttcgtcttcagcggcctgcagggctcggccgatgcgctgctgctggcgcgctacctggag
cagcatcgcgccaccgcgccaatgctggcggtggtctgcgccaacgccgtcgacgcccag
cggctggccgacgagctgcgctggttcgccccgcaggcccgcgtgaagctgctgccggac
tgggaaacgctgccgtacgacaacttctcgccgcaccaggacctgatctccgagcggctg
gcgacgctgcacgacctgcagggcggcgcgtgcgacctcctgctggtgccggcctccacg
gcactgcagcggatcgcgccgccgtcgttcctggcggcctacacgttcttcttcaagaag
ggcgaacggctggatgaggcggcgctcaaggcgcagttcacgctggccggctacgagcac
gtcagcgccgtgatgcgccccggcgaatacagcgtgcgcggcggcctgatcgacctgttc
ccgatgggctcgccgatgccttaccggctcgacctgttcggcgacgagatcgaaaccatc
cgcgccttcgaccccgacacgcagcgcagcctctatccggtgaacgaagtgcgcctgctg
ccgggccgcgagttcccgatggatgaggccgcgcgcaccgccttccgcggccgctggcgc
gaagtgttcgagggcgatccgacgcgcgcgcccatctacaaggacatcggcaacggcgtg
ccctcggccggcatcgagtattacctgccgctgttcttcgaagaaacggcgacgctgttc
gactacctgccggccaccgcgcacctggcgctggtcggcgacatcgaagccgcggtgcgg
cgcttctgggccgacaccacgcagcgctacaacttcatgcgccacgaccgcgaccggccg
ctgctggcgccccccgcgctgtacctcgacgaagaggcgttcttcgtcgccgccaagccg
catgcgcgcctcgtactgcgcgccgaggcggatgatgccccgctctcgctgccgctgccc
aacgtggccgtcaaccgccgcgcggaagacccgctcgtcaatctcgaagcgttcctgatg
cgcggcaactgccgcgtgatgatctgcgcggaatccgccggccggcgcgagacgctggca
cagatgctcgccgccagcggcctgcaccccgaaggcgtggccgactgcgccgacctgatg
ggcggcgaggcccgcttcgtgctcggggtggcgccgctgtaccagggcttcatcctgggc
gacgagcgcatcgccttcatcaccgagaccgagctgtacgcccaggccgtgcgccgcagc
ggccgccgcaagcaggaacaggccaccgccgtcgatgccatggtgcgcgacctggccgaa
ctgaagatcggcgatccggtggtgcacagcgagcacggtatcggccgctaccagggcctg
gtctcgatcgacatgggcaacggcgaggaagagttcctgcacctggactacgacaagggc
agcaagctctacgtaccggtgcatcagttgcacgtgatctcgcgctactccggcgccgat
ccggacaccgcgccgctgcaccagctcggctccggccagtgggaaaaggccaagcgccgc
gccgcgcagcagatccgcgacaccgccgccgaactgctgaacctctacgcccgccgcgca
ctgcgccagggcttcgccttcccgctcacgcccaacgactacgaggccttcgccgaaagc
ttcggctttgacgaaacgcccgaccaggccgccgccatcaccgccgtgatcgccgacatg
acctcgggcaagccgatggaccggctggtgtgcggcgacgtcgggttcggcaagaccgag
gtcgcgctgcgcgccgccttcgtcgccgtgatgggcggcaagcaggtcgccatgctggcg
ccgaccacgctgctggccgagcagcactaccagaccctggccgaccgcttcgccgactgg
ccggtgcgcatcgccgagatctcgcgcttcaagaacaagaaggagatcgacgccgccatc
gaggccatcaacgccggcaccatcgacatcgtgatcggcacgcacaagctgctctcgccc
gacgtgcagttcgaccggttggggctggtcatcatcgacgaagagcaccgcttcggtgtg
cgccagaaggaagcgctcaagacgctgcgcgccgaggtcgacgtgctcacgctgaccgcc
acgccgatcccgcgcacgctgggcatggcgctggaaggcctgcgtgacttctccgtgatc
gccacggcgccgcagaagcggctggccatcaagaccttcgtgcggcgcgaggaagacagc
gtgctgcgcgaggccatcctgcgcgagctcaagcgcggcggccaggtctatttcctgcac
aacgaggtcgagaccatcgagaacaagcgggccaagctggaagcgctcgtgcccgaggca
cgcgtggcggtcgcccacgggcagatgcacgagcgcgagctggagcgcgtgatgcgcgat
ttcgtcgcccagcgcgccaacatcctgctgtgcacgaccatcatcgagaccggcatcgac
gtgccgaccgccaacaccatcctgatccaccgtgccgacaagttcggcctggcgcaactg
caccagctgcgcggccgcgtcgggcgctcgcaccaccaggcctacgcctacctgctggtg
cacgatgcggagggcctgaccaagcaggcccagcgccggctggaggccatccagcagatg
gaggagctcggctccggcttctacctggcgatgcacgacctggagatccgcggcgcgggc
gaggtgctgggcgacaagcagtcgggcgagatttccgagatcggcttccagctctacacc
gacatgctcaaccaggcggtcaaatcgctcaaggccggcaaggagcccgacctgatggcg
ccgctggcggccaccaccgagatcaacctcggcacccccgccctgctgcccaacgactac
tgcggcgacgtgcaggagcgcctgtcgctgtacaagcgcctggccaactgcgagtccggc
gagaccatcgacaacatccaggaagagctgatcgaccgcttcggcaagctgccgccgcag
gcgcagtcgctgatcgagacacatcggctgcgcatcgccgcggtgccgctgggcatccgc
aagatcgataccggccccgacgccgtcacgctgcagttcgtgccgaacccgccggtcgac
gccatcaagatcatcgacctggtgcagaagaaccgccagatcaagctggccggccaggac
cgcctgcgcatcgagaacatccccaccgagaccgccgcgctggcgcaggccatccgccac
accctgcggcaactggcctga
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