Ralstonia pseudosolanacearum GMI1000: RSc0420
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Entry
RSc0420 CDS
T00071
Symbol
uvrA1
Name
(GenBank) probable excinuclease abc subunit a (dna repair atp-binding) abc transporter protein
KO
K03701
excinuclease ABC subunit A
Organism
rso
Ralstonia pseudosolanacearum GMI1000
Pathway
rso03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RSc0420 (uvrA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rso03400
]
RSc0420 (uvrA1)
DNA repair and recombination proteins [BR:
rso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RSc0420 (uvrA1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RSc0420 (uvrA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
AAA_23
nSTAND1
RsgA_GTPase
DnaJ_CXXCXGXG
AAA_21
AAA_22
nSTAND3
Viral_helicase1
APS_kinase
cobW
FtsK_SpoIIIE
DUF3667
Motif
Other DBs
NCBI-ProteinID:
CAD13948
UniProt:
Q8Y2B6
LinkDB
All DBs
Position
complement(446302..449166)
Genome browser
AA seq
954 aa
AA seq
DB search
MEAIKIRGARTHNLKNINLDLPRNQLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYC
PEHGQPLEAQSVSQMVDAVLALPADTKLMILAPVVTNRKGEHVDLFEAMQAQGFVRFRIR
SGGGTAHEAEAKVYEVDALPKLKKNDKHAIEVVVDRVKVNPELKQRLAESFETALRLADG
RALALEMDTGKEHVFSSKFACPICSYSLPELEPRLFSFNNPMGACPHCDGLGQITFFDPK
RVVAFPNLSLASGAIKGWDRRNQFYFQMLQSLAAFYDFDTDTPFEELPSEVQDVVLQGSG
KQQIPFTYINERGRTTVREHAFEGIIPNLERRYKETDSIAVREELAKYQNNQACPECEGT
RLRREARHVKLGDSDQARAIYEINGWPLRDALTYFLTLNLHGAKREIADKIVQEITSRLN
FLNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLI
GTLKHLRDLGNSVLVVEHDEDMIRASDHVVDIGPGAGVHGGQIIAEGTPRQIERSPGSLT
GEYLSGKRRIEVPKQRTAPDEARWLRIVNASGNNLKHVNADIPVGLLTCVTGVSGSGKST
LINDTLYNAVARHLYGSTPEPTAHDRIDGLEHFDKVINVDQSPIGRTPRSNPATYTGLFT
PIRELYAGVPAAKERGYDPGRFSFNVKGGRCEACQGDGVLKVEMHFLPDVYVPCDVCHGK
RYNRETLEVLYKGKNITEVLEMTVEQAHEFFAPVPVVRRKLQTLLDVGLGYIRLGQSATT
LSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIELLLKVIHKLRDQGNTVVIIE
HNLDVIKTADWLLDLGPEGGAGGGQIIAKGTPEEVAKSRASFTGKYLAPLLKRK
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atggaagccatcaagattcgtggggcccggacccacaacctgaagaacatcaacctcgat
ctgccgcgcaatcagctggtggtgatcacggggctgtcggggtcgggcaagtcgtcgctc
gcgttcgacacactctatgcggaagggcagcgccgctacgtggagtcgctgtcggcctat
gcgcggcagttcctgcaactgatggaaaagccggacgtcgacctgatcgaaggcctgtcg
ccggccatctcgatcgaacagaaggccaccagccacaacccgcgctccaccgtcggcacc
gtcaccgagatccacgactacctgcgcctgctgtacgcccgcgccggcacgccctactgc
ccggagcacggccagccgctggaagcgcagagcgtgtcgcagatggtggacgccgtgctg
gcgctgccggccgacaccaagctgatgatcctggcgcccgtggtgaccaaccgcaagggc
gagcacgtggacctgttcgaggcgatgcaggcgcagggcttcgtgcgcttccgcatccgc
tcgggcggcggcacggcgcacgaggccgaagccaaggtctacgaggtcgacgcgctgccc
aagctgaagaagaacgacaagcacgccatcgaggtggtggtcgatcgcgtcaaggtcaac
ccggaactcaagcagcgcctggccgaatccttcgagaccgcgctgcgcctggccgacggc
cgcgccctcgcgctggagatggacacgggcaaggagcacgtcttcagctccaagttcgcc
tgcccgatctgctcgtattcgctgccggagctggagccgcgcctgttctcgttcaacaac
ccgatgggcgcctgcccccattgcgacggcctgggccagatcaccttcttcgacccgaag
cgcgtggtggccttccccaacctgtcgctggcctcgggcgccatcaagggctgggaccgc
cgcaaccagttctacttccagatgctgcagagcctggcggcgttctacgacttcgacacc
gacacgccgttcgaagagctgcccagtgaagtccaggacgtcgtgctgcagggctcgggc
aagcagcagatcccgttcacgtacatcaacgaacgcggccgcaccacggtgcgcgagcat
gccttcgagggcatcatccccaacctggagcggcgctacaaggaaaccgactccatcgcc
gtgcgcgaagaactggccaagtaccagaacaaccaggcctgccccgagtgcgagggcacg
cgcctgcgccgcgaggcgcgccacgtcaagctcggcgacagcgaccaggcccgcgccatc
tacgagatcaacggctggccgctgcgcgatgcgctcacgtatttcctcacgctgaacctg
cacggcgccaagcgcgagatcgccgacaagatcgtccaggaaatcacctcgcggctgaac
ttcctgaacaacgtcgggctcgactacctctcgctggagcgcagcgccgacacgctctcc
ggcggcgaggcgcagcgcatccgcctggcctcgcagatcggctcgggcctgaccggcgtg
atgtacgtgctggacgagccctccatcggcctgcaccagcgcgacaacgaccggctgatc
ggcaccctcaagcacctgcgcgacctcggcaactcggtgctggtggtcgagcacgatgaa
gacatgatccgcgcctcggaccacgtggtcgacatcggccccggcgccggcgtgcacggc
ggccagatcatcgccgaaggcacgcccaggcagatcgagcggtcacccggctcgctgacc
ggcgaatacctgtcgggcaagcgccgcatcgaggtgcccaagcagcgcaccgcgcccgac
gaagcgcgctggctgcgcatcgtcaacgcgtcgggcaacaacctgaagcacgtcaacgcc
gacatcccggtcgggctgctcacctgcgtgacgggcgtatcgggctcgggcaaatcgacg
ctgatcaacgacacgctgtacaacgcggtggcacgccacctctacggctccaccccggag
cccaccgcgcacgaccgcatcgacggcctggagcacttcgacaaggtcatcaacgtcgac
cagtcgccgatcggccgcaccccgcgctccaacccggccacctacaccggcctgttcacg
ccgatccgcgagctgtatgcgggcgtgccggccgccaaggagcgcggctacgacccgggc
cgcttctcgttcaacgtcaagggcggccgctgcgaggcatgccagggcgacggcgtgctc
aaggtcgagatgcacttcctgcccgacgtgtacgtgccctgcgacgtgtgccacggcaag
cgctacaaccgcgagacgctggaggtgctgtacaagggcaagaacatcaccgaagtgctc
gagatgacggtcgagcaggcgcacgagttcttcgcgccggtgccggtggtgcgccgcaag
ctgcagacgctgctggacgtgggcctgggctacatccgcctgggccagtcggcgaccacg
ctgtcgggcggcgaggcacagcgcgtgaagctgtcgctggagctgtccaagcgcgacacc
ggccgcacgctctacatcctcgacgagccgaccaccggcctgcacttccacgacatcgag
ctgctgctcaaggtgatccacaagctgcgcgaccagggcaacacggtcgtcatcatcgag
cacaacctcgacgtgatcaaaacggcggactggctgctcgacctcggccccgaaggcggc
gccggcggcgggcagatcatcgccaagggcacgccggaggaggtggccaagagccgcgcg
agctttaccggcaagtatctggcgccgctgctcaagcgcaaatga
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