Ralstonia pseudosolanacearum GMI1000: RSc1642
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Entry
RSc1642 CDS
T00071
Symbol
mfd
Name
(GenBank) probable transcription-repair coupling factor protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rso
Ralstonia pseudosolanacearum GMI1000
Pathway
rso03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RSc1642 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rso03400
]
RSc1642 (mfd)
Enzymes [BR:
rso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RSc1642 (mfd)
DNA repair and recombination proteins [BR:
rso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RSc1642 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
AAA_30
SNF2-rel_dom
ERCC3_RAD25_C
MRP-S22
Motif
Other DBs
NCBI-ProteinID:
CAD15344
UniProt:
Q8XYW4
LinkDB
All DBs
Position
complement(1764304..1767777)
Genome browser
AA seq
1157 aa
AA seq
DB search
MSCFALPTDSPTFLMSDLSLSALPIVKPGQRFVFSGLQGSADALLLARYLAQHRDAVPML
AVVCANAVDAQRLADELRWFAPQARVKLLPDWETLPYDNFSPHQDLISERLATLHDLQGG
ACDLLLVPASTALQRIAPPSFLAAYTFFFKKGERLDEAALKAQFTLAGYEHVSAVMRPGE
YSVRGGLIDLFPMGSPMPYRLDLFGDEIDTIRAFDPDTQRSLYPVNEVRLLPGREFPMDE
AARTAFRGRWREVFEGDPTRAPIYKDIGNGVPSAGIEYYLPLFFETTATLFDYLPASAHL
ALVGDIESAVRRFWADTTQRYGFMRHDRDRPLLAPSALYLDEEAFFIAAKPHARLVLRAE
PGEAPLSLPLPSVAVNRRAEDPLVNLESFLTRGNCRVMICAESAGRRETLAQMLAASGLH
PEGVADCADLMGGDARFVLGVAPLYQGFILGDERIAFITETELYAQALRRGGRRKQEQAT
AVDAMVRDLAELKIGDPVVHSEHGIGRYQGLVSIDMGNGEEEFLHLDYDKGSKLYVPVHQ
LHVISRYSGADPDTAPLHQLGSGQWDKAKRKAAQQIRDTAAELLNLYARRALRQGFAFPL
APNDYEAFAESFGFDETPDQAAAITAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVA
VMGGKQVAMLAPTTLLAEQHYQTLADRFADWPVRIAEISRFKNKKEIDAAIEAINAGTID
IVIGTHKLLSPDVKFNRLGLVIIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGM
ALEGLRDFSVIATAPQKRLAIKTFVRREEDGVLREAILRELKRGGQVYFLHNEVETIENK
RAKLEELVPEARVAVAHGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILI
HRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDADGLTKQSQRRLEAIQQMEELGSGFYL
AMHDLEIRGAGEVLGDKQSGEISEIGFQLYTDMLNQAVKSLKAGKEPDLMAPLAATTEIN
LGTPALLPSDYCGDVQERLSLYKRLANCESGETIDNIQEELIDRFGKLPPQAQSLIETHR
LRIAAVPLGIRKIDTGADAVTLQFVPNPPVDAIKIINLVQKNRQIKLAGQDRLRIENIPA
ETAALAQAIRQTMRQLT
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgtgctttgccttgccgaccgattccccaacgtttctcatgtccgatctctcgctt
tccgccctgccgatcgtcaagcccggccagcgcttcgtcttcagcggcctgcagggctcg
gccgatgcgctgctgctggcgcgctacctggcgcagcaccgcgacgccgtgccgatgctg
gcggtggtctgcgccaacgccgtcgatgcccagcggctggccgacgagctgcgctggttc
gccccgcaggcgcgcgtgaagctgctgccggactgggaaacgctgccgtacgacaacttc
tcgccgcaccaggacctgatctccgagcgcctggcgacactgcacgacctgcagggcggc
gcgtgcgacctcctgctggtgccggcctccacggcgctgcagcggatcgcgccgccgtcg
ttcctggcggcctatacgttcttcttcaagaagggcgagcggctggatgaggccgcgctc
aaggcgcagttcacgctggccggctacgagcacgtcagcgccgtgatgcggcccggcgaa
tacagcgtgcgcggcggcctgatcgacctgttcccgatgggctcgccgatgccctaccgg
ctcgacctgttcggcgacgagatcgacaccatccgcgccttcgaccccgacacgcagcgc
agcctgtacccggtgaacgaagtgcgcctgctgccgggccgcgaattcccgatggacgag
gccgcgcgcaccgccttccgcggccgctggcgcgaagtgttcgagggcgacccgacgcgc
gcgcccatctacaaggacatcggcaacggcgtgccctcggccggcatcgagtactacctg
ccgctgttcttcgaaaccaccgccacgctgttcgactacctgccggccagcgcgcacctg
gccctggtcggcgacatcgaaagcgcggtgcggcgcttctgggccgacaccacgcagcgc
tacggcttcatgcgccacgaccgcgaccgcccgctgctggcgccgtccgcgctgtacctg
gacgaagaggccttcttcatcgccgccaagccgcatgcccggctggtgctgcgcgccgag
ccgggcgaggcgccgctgtcgctgccgctgcccagcgtggccgtcaaccgccgcgcggaa
gacccgctcgtcaacctcgaatcgttcctgacgcgcggcaactgccgcgtgatgatctgc
gccgaatcggccggccggcgcgagacactggcgcagatgctggccgccagcggcctgcac
cccgaaggcgtggccgactgcgccgacctgatgggcggcgacgcccgcttcgtgctcggc
gtggcgccgctgtaccagggcttcatcctgggcgacgagcgcatcgccttcatcaccgag
accgagctgtacgcccaggccctgcgccgcggcgggcgccgcaagcaggagcaggccacc
gccgtcgacgccatggtgcgcgacctggccgagttgaagatcggcgatccggtggtgcac
agcgagcacggcatcggccgctaccaaggcctggtctcgatcgacatgggcaacggcgag
gaagagttcctgcacctcgactacgacaagggcagcaagctctacgtgccggtgcaccag
ttgcacgtgatctcgcgctactcgggcgccgatcccgataccgcgccgctgcaccagctc
ggctccggccagtgggacaaggccaagcgtaaagccgcgcagcagatccgcgacaccgcc
gccgagctgctgaacctgtatgcccgccgcgccctgcgccagggcttcgccttcccgctc
gcgcccaacgactacgaggccttcgccgagagcttcggcttcgacgagacgcccgaccag
gccgccgccatcaccgccgtgatcgccgacatgacctcgggcaagccgatggaccggctg
gtgtgcggcgacgtcggcttcggcaagaccgaggtcgcgctgcgcgctgccttcgtggcc
gtgatgggcggcaagcaggtcgccatgctggcgccgaccacgctgctggccgagcagcac
taccagacgctcgccgaccgcttcgccgactggccggtgcgcatcgccgagatctcgcgc
ttcaagaacaagaaagagatcgacgccgccatcgaggccatcaacgccggcaccatcgac
atcgtgatcggcacgcacaagctgctctcgcccgacgtgaagttcaaccggctggggctg
gtcatcatcgacgaggagcaccgcttcggcgtgcgccagaaggaggccctcaagacgctg
cgcgccgaggtcgacgtgctcacgctgaccgccacgccgatcccgcgcacgctgggcatg
gcgctggagggcctgcgcgacttctccgtgatcgccacggcgccgcagaagcggctggcc
atcaagaccttcgtgcggcgcgaggaagacggcgtgctgcgcgaggccatcctgcgcgag
ctcaagcgcggcggccaggtctacttcctgcacaacgaggtcgagaccatcgagaacaag
cgggccaagctggaagaactcgtgcccgaggcgcgcgtggcggtcgcccacggccagatg
cacgagcgcgagctggagcgcgtgatgcgcgatttcgttgcccagcgcgccaacatcctg
ctgtgcacgaccatcatcgagaccggcatcgacgtgccgaccgccaacaccatcctgatc
caccgcgccgacaagttcggcctggcgcagctgcaccagctgcgcgggcgcgtcgggcgc
tcgcaccaccaggcctatgcctacctgctggtgcacgatgcggacggcctgaccaagcag
tcgcagcgccggctggaagccatccagcagatggaggagctcggctccggcttctacctg
gcgatgcacgacctggagatccgcggcgcgggcgaggtgctgggcgacaagcagtcgggc
gagatctccgagatcgggttccagctctataccgacatgctcaaccaggcggtgaagtcg
ctcaaggccggcaaggagcccgacctgatggcgccgctggcggccaccaccgagatcaac
ctcggcacccccgccctgctgcccagcgactattgcggcgacgtgcaggagcgcctgtcg
ctgtacaagcgcctggccaactgcgaatcgggcgagaccatcgacaacatccaggaagag
ctgatcgaccgcttcggcaagctgccgccgcaggcgcagtcgctgatcgagacgcatcgg
cttcgcatcgccgcggtgccgctgggcatccgcaagatcgacaccggcgccgatgccgtc
acgctgcagttcgtgccgaacccgccggtcgatgccatcaagatcatcaacctggtgcag
aagaaccgccagatcaagctggccggccaggaccgcctgcgcatcgagaacatccccgcc
gagaccgccgcgctggcgcaggccatccgccagaccatgcggcagctgacctga
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