Ralstonia pseudosolanacearum GMI1000: RSp0875
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Entry
RSp0875 CDS
T00071
Symbol
popC
Name
(GenBank) type III effector protein popc
Organism
rso
Ralstonia pseudosolanacearum GMI1000
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_4
LRR_8
LRR_9
Motif
Other DBs
NCBI-ProteinID:
CAD18026
UniProt:
Q9RBS2
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Position
megaplasmid:complement(1102522..1105476)
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AA seq
984 aa
AA seq
DB search
MPILPRLFHRTSRTSSADTQRDARTPPNASPLHGEPGRTPRSRGELGRNLRLRSNAQTSG
TPGTPARPQIRASASRTAPSTPQHPQGTEGTRTVPNSPLHNDARVFRERADHTGLSAWRT
EMLTRFIEHSRKHGLANDFEQVRVYDRLSRAVDHLKSVLRMSGDSVQLKSLPVPELPDVT
FEIAHLKNLETVDCDLHALPATLENLFLLETLSLKGAKNFKALPDAVWRLPALQELKLSE
TGLKSLPPVGGGSALQRLTIEDSPLEQLPAGFADLDQLASLSLSNTKLEKLSSGIGQLPA
LKSLSLQDNPKLERLPKSLGQVEELTLIGGRIHALPSASGMSSLQKLTVDNSSLAKLPAD
FGALGNLAHVSLSNTKLRDLPASIGNLFTLKTLSLQDNPKLGSLPASFGQLSGLQELTLN
GNRIHELPSMGGASSLQTLTVDDTALAGLPADFGALRNLAHLSLSNTQLRELPANTGNLH
ALKTLSLQGNQQLATLPSSLGYLSGLEELTLKNSSVSELPPMGPGSALKTLTVENSPLTS
IPADIGIQCERLTQLSLSNTQLRALPSSIGKLSNLKGLTLKNNARLELLSESGVRKLESV
RKIDLSGCVRLTGLPSSIGKLPKLRTLDLSGCTGLSMASLPRSLVLPRDGLNVIFPEHLK
TDVGNARIQQNPRARLLEGHLERQNEAMNHAMFGDDESVGSMTSVPDNEAGVVSMAFHAK
HAYKRLERLRQEAGSSMAAPMRNNDAESMRRALAYAFRSMSDLPTFKKLDNAARSLSYEV
QEQLADLVAAPVGQKLVKAIAEGAYGAGRDARAIEQMLPELATRIANHPEIQQLREQAKR
YPSSLPPEKLAAKLTPLIQPLWDGTRAVAPMPGQLRQALQDLLVTAEGRQLASEIDRAAH
SHRAGDEGKALRGLLPVLAAKIGSDPRVVRVREFVSRHTFGSPQQRAESLAQTLTPVVQE
LWAQTQAEVAKQGQTPAASPSRQR
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgcctatccttccacgcctattccatcgaacatcgcgcacgtcgtccgccgacacgcaa
cgcgacgccaggacaccgccgaacgcctcgccgctgcatggagaaccgggacggaccccg
cgctcaagaggggagcttggccgcaacctgcgtctgcgcagcaacgcgcagacgagcggc
acccctggcactccggcacgcccccagatccgcgcctcggcgtcgcgcaccgcaccgagc
accccacagcacccgcagggaaccgaaggcactcgcacggttccgaacagcccgttgcac
aacgatgctcgcgtgttcagagaacgcgcagaccacaccgggttgtcggcctggcgcacc
gagatgctgacccggtttatcgaacacagccgcaaacacggtttggccaacgacttcgag
caggtgcgggtctacgaccgactgtcgcgagccgtcgaccacctgaagagcgtcctccgg
atgagcggcgacagtgtccaattgaagtcgctccccgtccccgagctgccggatgtcacc
tttgagatcgcccacctgaagaacctcgagaccgtggattgcgatctgcacgcgttgcct
gccacgctggaaaatctgttcttgctggagaccttgtccttgaagggcgccaagaacttc
aaggccctgcccgatgccgtctggcgattgcccgcactgcaagagctgaagctctcggaa
acgggcctaaaatccctgccgccggtcggaggcggatccgcactgcagcggcttacgatt
gaagattcgccgctcgaacagcttccggccggattcgctgacctcgaccaacttgccagc
ctgtcgctgtcgaacacgaagctggagaaactgtcttccggcatcgggcagttgccggcg
ctgaagtccctctccctgcaggacaatccaaagctggagcggttgcccaagtcgctcggg
caggtggaagagctcacgctcatcggcggccgcattcatgcgctgccgtcggcgagcggg
atgtcgtcgttgcaaaagctcacggtggacaactcgtcgctggcaaagctgccggccgac
ttcggtgcgctcggcaatctggcccacgtgtcgctgtcgaatacgaagttgcgcgatctg
cccgcgagcatcgggaacttgttcacgctgaagacgctgtcattgcaggacaaccccaag
ctggggtcgctgcccgcttcgttcgggcaactgtccggtcttcaagagctgacactcaac
ggcaaccgcattcatgagctgccatcgatgggcggggcatcgtcattgcagacgctcacg
gtggatgacaccgcgctggccgggttgccggccgacttcggcgcgctccgcaatctggcc
catctgtccctgtcgaatacacagctgcgagagctgcctgcaaacaccgggaacctgcac
gcgctgaaaacgctgtcgttgcaaggcaaccagcaactggcgaccttgcccagctcgctt
gggtatttgtcagggctggaggagctgacgctcaagaacagcagcgtcagcgagctgcca
ccgatgggcccgggctccgcactgaagacgctcacggtggaaaattcacctctgacgtcg
attccggccgacatcggtatccagtgcgagcggctgacgcagttgtcgctgtcgaacacg
caactgcgcgccctgccctccagcatcggcaagttgtcgaatctgaaggggctgacgctg
aagaacaacgcccgccttgaattgctgtccgaaagcggagtccgcaagctggagtcggtg
aggaagatcgacctgtcgggttgcgtgaggctcaccggactgccctcttcgattggaaag
ctgccaaagctgaggacactcgacttgagcggctgcaccggcctgagcatggcaagcctg
ccgcgttcgctcgtgttgccgcgcgatgggctgaacgtcatctttccggagcacctgaaa
accgacgtgggcaatgcacgtattcaacagaatccacgtgcccggttgctggaaggccat
ctggagcgccagaacgaggcgatgaatcacgccatgttcggggacgacgagtcggtgggg
tcgatgacgagtgtgccggacaatgaagccggggtcgtgtcgatggccttccatgccaaa
catgcatacaagcgcctcgagaggctccggcaggaggccggcagcagtatggccgcaccg
atgaggaacaacgatgcggaatccatgcgcagagccttggcctatgcgttcaggagcatg
tccgatctgccgacgttcaagaaactggataacgcggcacgctcgctgtcttatgaggtc
caggagcaactggccgatctggtggccgcgcccgtggggcagaaactggtcaaggcgatc
gccgagggtgcctatggcgcggggcgggatgcccgggcgatcgagcagatgttgccggag
ctggcaacgcggatcgccaaccatccggagatccagcaactgcgggaacaggccaagcga
tacccgagcagcctgcctccggagaagctcgccgcaaaactaacgcccttgatccagccg
ctctgggacggcacacgggcggtggcaccgatgccaggccaactgcgtcaagcgctgcaa
gacctgctcgtcaccgctgaggggcgtcaactggccagcgagatcgaccgggcggcgcac
agtcaccgcgcgggggatgaggggaaggcgctgcgtggtctcctgcccgttctggccgcc
aagatcggctcggaccctcgcgtcgttcgggtgcgggaattcgtgagccggcacacgttc
ggcagtccgcaacagcgcgcggaaagccttgcgcagacgctgaccccggtcgttcaggaa
ctctgggcgcaaacgcaagccgaggtggcgaagcaaggccagacgcccgcggcaagtccg
tcgaggcagcgttga
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