Cereibacter sphaeroides 2.4.1: RSP_2850
Help
Entry
RSP_2850 CDS
T00284
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rsp
Cereibacter sphaeroides 2.4.1
Pathway
rsp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RSP_2850 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsp03400
]
RSP_2850 (mfd)
Enzymes [BR:
rsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RSP_2850 (mfd)
DNA repair and recombination proteins [BR:
rsp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RSP_2850 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
AAA_16
SecA_DEAD
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ABA78960
UniProt:
Q3J2M4
LinkDB
All DBs
Position
1:complement(1453618..1457115)
Genome browser
AA seq
1165 aa
AA seq
DB search
MQNGTRIFLGGAPEGYDARLVAKELDRGAPVIHVARDDKRLEAMRTALAVMAPRAVVLEL
PAWDCLPYDRVSPNPEISARRMATLAALAHGMPGAFVLLTTLNAATQRIPAREVLRAASF
SARVGDRVDEGRLRSYLARMGFSLTDTVTEPGDYAIRGGIVDIYPPGVAGPVRLDFFGDV
LDGARRFDPETQRTVEKLDLVELAPVSEVMLDEGAFTRFRQNYRIEFGAAGTDDPLYEAV
SAGRKHQGMEHWLPFFHARLETLFDYLPEASVMLDDQVTPARISRWEGIADQYDARREAM
TAKGRLDTVYKPAAPDLLYLDEAAWEAAVAGHRVIQLSPLAQSPGPGVLDAGGRMGRSFA
PERQAENISLFGALVDHVRSLREDRQVVIASWSEGARERLKGLLEEAGLQGTKLAQDIRD
VPEARGGTHLMVWALEQGFTAPGLAVISEQDVLGDRLISKPKKRRKAENFLREHDTLTPG
DLVVHVEHGVGRYMGLETLRVPQPPSNKPGPPHDYLHLVYAEDAKLYLPVENIELLSRYG
HEEGLLDKLGGGAWQAKKARLKERIREIAERLMRIAAERHLRHAPILEAPHSLWEAFSAR
FPYQETDDQLSAIADVVKDLESGSPMDRLVVGDVGFGKTEVAMRAAFVAALAGMQVAVIC
PTTLLARQHFRSFAERFRGFPMKVHQLSRFVSAREAAETRSGLADGTVDICIGTHALLAK
GVKLKNLGLLIIDEEQHFGVSHKERLKEMRSEVHVLTLTATPIPRTLQLSLTGVRDLSII
ATPPVDRLAIRTYVSEFDTVTIREALLRERYRGGQSFFVVPRLSDLPDMEAFLRDHVPEV
SYVVAHGQLAAGELDERMNAFYDGKFDVLLATTIVESGLDIPTANTMIVHRADMFGLSQL
YQIRGRVGRAKTRAYCYLTTKPRAPLTPQAIKRLRLLASLDSLGAGFNLASHDLDLRGAG
NLLGEEQSGHIKEVGYELYQQMLEETIQKIRSGELQGLSEPDEQWAPQINLGVPVLIPEE
FVPDLDVRLGLYRRLSGLTTKVELEGFAAELIDRFGPLPREVNTLLLVVRIKAMCKRAGI
SRLETGPRGATVQFHNDKFANPAGLVDFIKAQGETARVKDNKIVLARDWKTEGERIKGAF
AIARDLAEKVVKPEKTPAKVARPAG
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgcagaacggaacgcggatcttcctcggcggtgcgcccgagggctacgatgcccggctg
gtcgcgaaagagctcgaccgcggtgcccctgtcattcacgtcgcgcgcgacgacaagcgg
ctcgaggccatgcgcacggcgctggccgtcatggcgccgcgcgccgtggtgctggagctt
ccggcctgggactgcctgccctacgaccgggtctcgcccaaccccgagatctcggcgcgg
cggatggcgacgctcgccgccctggcgcacgggatgccgggggccttcgtcctgctgacc
acgctcaatgccgcgacccagcgcattcccgcgcgcgaggtgctgcgggcggcctccttc
tcggcccgcgtgggcgaccgggtggatgagggacgccttaggtcctatctcgcccgcatg
ggattctcgctcaccgacacggtgacggagcccggcgactatgcgatccgcggcggcatc
gtcgacatctatccgccgggtgtggcggggccggtgcggctcgatttcttcggcgacgtg
ctggacggagcgcgccgcttcgaccccgagacccagcgcacggtcgagaagctcgacctc
gtggagctggccccggtgtcggaggtgatgctggacgagggtgcctttacccgcttccgc
cagaactatcggatcgagttcggcgcggcggggacggacgacccgctctacgaggccgtg
tcggcaggccgcaagcatcaggggatggagcactggctgcccttcttccacgcgcggctc
gagacgctcttcgactatctgcccgaggcgagcgtgatgctcgacgatcaggtgacgccg
gcgcggatctcgcgctgggaggggatcgccgaccagtatgacgcgcggcgcgaggcgatg
acggcgaagggccggctcgacacggtctacaagcccgccgcgccggatctcctctatctc
gacgaagccgcatgggaggcggccgtggccgggcaccgggtgatccagctttcgccgctg
gcccagagccccggtccgggcgtcctcgatgcgggcgggcggatggggcgcagcttcgcg
cccgagcgtcaggccgaaaacatcagcctgttcggggcgttggtcgatcatgttcgcagc
ttgcgcgaggatcggcaggtcgtgatcgccagctggtccgagggcgcgcgcgaacggctg
aaggggcttctcgaggaagccggcctgcagggcacgaagctcgcgcaggacatccgcgac
gtgcccgaggcacgcggcggcacgcatctgatggtctgggcgctggagcagggcttcacc
gcgccggggctcgccgtgatctcggaacaggatgtgctgggcgaccggctgatctcgaag
ccgaagaagcgccggaaggccgagaacttcctgcgcgagcacgacacgctgacgcccggc
gatctcgtcgtccatgtcgagcatggcgtgggccgctacatgggcctcgagacgctgcgg
gtgccgcagccgccctcgaacaagccggggccgccgcacgattacctgcatctcgtctat
gccgaggacgcgaagctctacctgccggtcgagaatatcgagcttctgagccgctacggg
cacgaagaggggctgctcgacaagctgggcggcggggcgtggcaggccaagaaggcgcgc
ctcaaggagcggatccgcgagattgccgagcggctcatgcggatcgcggccgagcggcac
ctgcgccatgcgccgatcctcgaggcgccgcattcgctgtgggaggccttttcggcccgc
ttcccctatcaggagacggacgaccagctgtcggccatcgcggatgtggtgaaggacctc
gaatccggcagcccgatggaccggctcgtggtgggcgatgtgggcttcggcaagaccgag
gtcgcgatgcgggcggccttcgtggcggcattggcgggcatgcaggtggccgtcatctgc
ccgaccacgcttctcgcccgtcagcatttccgcagctttgccgagcgcttccgcggcttt
ccgatgaaagtgcatcaactgtcgcgcttcgtctcggccagggaggcggccgagacgcgg
tcgggcctcgccgacggcacggtggatatctgcatcggcacccatgcgcttctggccaag
ggcgtgaagctgaagaacctcgggctcctcatcatcgacgaggagcagcatttcggcgtg
tcgcacaaggagcggctgaaggagatgcgctccgaggtccatgtgctgacgctgaccgcg
acgcccatcccgcggacgctgcaactgtcgctgaccggcgtgcgcgatctgtcgatcatc
gcgacgccgcccgtggaccggctcgccatccgcacctacgtctcggaattcgatactgtg
acgatccgcgaggcgctcctgcgcgagcggtatcggggcgggcagagcttcttcgtcgtc
ccgcggctctcggatctgcccgacatggaggccttcctgcgcgaccatgtgcccgaggtc
tcctatgtggtggcgcacggccagctggcggcgggcgagctcgacgagcggatgaatgcc
ttctacgatggcaagttcgacgtgcttctggccacgaccatcgtagagtcgggcctcgac
atcccgaccgccaacacgatgatcgtccatcgcgccgacatgttcggcctgagccagctc
tatcagatccgcggccgggtgggccgggccaagacgcgggcctattgctatctcacgacg
aagccgcgcgcgcctctcaccccgcaggcgatcaagcggctgcggctgctcgcctccctc
gacagtctcggcgcgggcttcaatctcgcctcgcacgacctcgacctgcgcggcgcgggc
aacctcctcggcgaggaacagtcgggtcatatcaaggaggtgggctacgagctttaccag
cagatgctggaggagacgatccagaagatccgctcgggcgagctgcagggcctgagcgag
cccgacgagcaatgggcgccgcagatcaacctcggcgtccccgtgctgatccccgaggag
ttcgtgcccgatctcgacgtgcggctcgggctttaccgcaggctctcgggtctcacgacc
aaggtcgagctcgaagggttcgcggccgagctgatcgaccggttcggcccgctgccgcgc
gaggtcaacacgcttctcctcgtggtgcgcatcaaggccatgtgcaagcgcgcgggcatc
tcgcggctcgaaaccggcccgcgcggggcgacggtgcagttccacaacgacaagttcgcc
aatccggcgggccttgtggatttcatcaaggcgcagggcgagacggcgcgggtgaaggac
aacaagatcgtgcttgcgcgcgactggaagaccgaaggcgaacggatcaagggcgccttc
gccatcgcccgcgatctggccgagaaggtggtgaagcctgagaagacccccgccaaggtc
gctcgaccggcgggctag
DBGET
integrated database retrieval system
