Rummeliibacillus stabekisii: ATY39_07945
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Entry
ATY39_07945 CDS
T04369
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rst
Rummeliibacillus stabekisii
Pathway
rst03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ATY39_07945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rst03400
]
ATY39_07945
Enzymes [BR:
rst01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ATY39_07945
DNA repair and recombination proteins [BR:
rst03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ATY39_07945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AMW99405
UniProt:
A0A143HD27
LinkDB
All DBs
Position
complement(1604515..1606335)
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AA seq
606 aa
AA seq
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MKPMLLTATEIIPSGADWLFETKYDGFRCILEWNKDIELYSRNEGNLSKQFPEILDFLAS
IKEKMKSYLPLALDGELVCLANDYKSEFSIVQSRARLRSKEKIKDQLNHFPCQFVVFDIL
QIKGKDITNLSFLKRKAKLKELFEKVSLPVTVMQNNLTSVQMVEPFEDSNQLWKQLVIYN
GEGVVAKEISSQWIENTRTNSWLKIKNWRYVNVMVTAYEQENNFFIGSVLSEKEFVEVVT
FKHGMKEEEIKILSQLFKQNGVKINQNRWELSPSICVKIACIDFVGGKLREPRFEAFEFN
IEPVDCTWHKLEKDLYPLPPSVEITHPDKPIFPLVRIEKDDYLYYLQVISPYLLPFLFNR
PLTLIRYPHGVPGESFYQKSAPVHVPSFVTVKDDQLYCNNVETLLWLGNQLAIEYHIPFQ
PVNSSGPTEIVFDLDPPSVEAFHLTLEAANQMKVIFDGLGFLSFIKTSGGKGMQIYIPLP
ANSFTYEDTGLFTKFICDFLIEQAPSLYTIERLKKNRRKKLYLDYVQHREGKTIIAPYSP
RGNESGFIATPLEWEEVKPGLTPDQFTIPVMIERVRAKGDLFRHFRKNVNNNEEALTRFL
RELKGE
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaccaatgcttttaactgctacagaaattataccttctggtgctgactggctattt
gaaacaaaatatgatggatttcgctgcattcttgaatggaataaggatatagagctatac
agcaggaatgaagggaatctaagtaagcaatttcctgagattttagattttttagcatct
attaaagaaaaaatgaaaagttatttaccattagctttggatggcgaactagtttgttta
gccaatgattacaaaagtgaattttccatcgtacaaagcagagcgcgtcttcgtagcaag
gaaaaaattaaagatcaactcaatcattttccatgtcaatttgttgttttcgatatatta
caaataaagggaaaagatatcacgaatctttctttcttaaagcgaaaagcaaagctaaag
gaactatttgaaaaagtatcattaccggttactgtgatgcagaataatttaacatcagtg
caaatggtagaaccttttgaggattccaatcaattgtggaaacagctagttatatataat
ggggaaggagtggttgcgaaagaaatatcaagccagtggatagaaaatactcgtaccaat
agctggctaaaaataaaaaactggcgatatgtaaatgttatggttaccgcatatgaacag
gaaaataatttttttataggaagtgttcttagtgaaaaagaatttgtggaagttgtaaca
tttaaacatggcatgaaagaagaggagataaaaattctttcccagttattcaaacaaaat
ggagtcaaaataaaccaaaaccggtgggagctatctccatcgatttgtgttaaaattgcc
tgcatagattttgttggagggaaattgagagagccaagatttgaggcatttgagttcaat
atagagccagttgattgtacatggcataaactagaaaaggatctatatcccctacctccc
tctgttgaaataactcatcctgacaaaccaattttcccattggtaaggattgaaaaggat
gattatttgtactacttgcaagttatttccccctatctattgccatttttattcaatcgt
ccactcacattaattcgttacccacatggtgtgccgggggaaagcttttaccaaaaaagt
gccccagtccatgtaccttcatttgtgacagtaaaagatgatcagctatattgcaataat
gttgaaacgcttctttggcttggaaatcaactagcaattgaatatcatattccttttcag
ccagtgaattcaagtggtcccacggaaattgtctttgatcttgaccctccctctgttgaa
gcatttcatttaacccttgaggctgcaaatcaaatgaaagtaatttttgatgggctaggt
ttcttatcttttataaaaacatcgggaggtaaaggaatgcagatctatattccattacct
gcaaattcttttacctatgaagacacaggattgtttacaaagtttatctgcgacttttta
atcgaacaagctccatcactttatacaattgagcggctcaagaaaaataggaggaaaaaa
ctctacttggattatgtccaacaccgtgaaggaaaaaccattatcgctccttattcacca
agggggaacgaaagcgggtttattgcaacccctcttgaatgggaagaagtgaaaccaggc
ttaacaccggaccaatttacaataccagtcatgatcgaaagggtacgcgctaagggagat
ttattccgtcattttcggaagaatgtgaacaacaacgaggaagcgctaacgcgatttttg
agagaattaaaaggggagtaa
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