Ruania suaedae: LQF12_04160
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Entry
LQF12_04160 CDS
T08275
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rsua
Ruania suaedae
Pathway
rsua03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rsua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LQF12_04160 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsua03400
]
LQF12_04160 (mfd)
Enzymes [BR:
rsua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LQF12_04160 (mfd)
DNA repair and recombination proteins [BR:
rsua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LQF12_04160 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
UFU03810
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All DBs
Position
920941..924624
Genome browser
AA seq
1227 aa
AA seq
DB search
MTLTGVLSAFRADDGVRELVEAVSTRGTLDITASVGARAPMLAELAARGGRTLVVTVATG
REGDELAAALGAYLDPAGVAVFPAWETLPHERLSPRSDTVARRIAVLRRLAHPDAVGDHA
GGAAGSGAPIRVLIVPVRAMLQPVVAGLGDLEPVALRPGDTAPMEEVVERLVAAAYTRVD
MVERRGEFAVRGGLLDVFAPTEAHPQRIEFWGDDVEEIRWFSAADQRSLEVSEDGMWAPP
TREILLTEAVRARAAALMPTLPGAAEMLEKLSQGIAVDGMESLAPVLVEEMVPFLDLVPD
DALLILHDPERIRRRAHDLVATTEEFLAAAWTSAAAGANTPIDLSGASFATLADTRDIAR
RRGLGWWAVGGFATDAELAELAEAADPAGETDGADDDAEASVVVRSRDVHGYRGETARAV
ADLKELTTQSWRLVLVTEGAGPARRMVEQLLEADVPARLVAEITPAGPEAREGEDPDLPP
SGVVLVTTASIGRGFVAEELRLAVFTEADLTGRPGTSTRDMRTMPSKRRNVVDPLALRPG
DHVVHEQHGVGRFVELIQRTVGVGKSAVTREYMVIEYAASKRGHPGDRLFVPTDSLDQVT
KYTGGESPSLNKMGGSDWAKTKGRARRAIKEIAGELIRLYSARMATEGHAFAPDTPWQRE
LEDAFAFVETPDQLSSIEEVKADMEKPVPMDRLISGDVGYGKTEIAVRAAFKAVQDGKQV
AVLVPTTLLVQQHLDTFSERYTGFPVTVKSLSRFQSAAEAEAVREGVRTGAVDVVIGTHR
LITGEVRFKNLGLVVVDEEQRFGVEHKETLKQLRTNVDVLAMSATPIPRTLEMAVTGIRE
MSTLATPPEERHPVLTYVGAYAERQITAAIRRELLREGQVFYVHNRVESIDRAAARLREL
VPDARIAVAHGKMNEHELERVIVDFWEKRFDVLVCTTIVETGLDISNANTLIVERADNFG
LSQLHQLRGRVGRGRERAYAYFLYPPEKPLTETAHERLQTIAAHTDLGAGIQVAMKDLEI
RGAGNLLGGEQSGHIAGVGFDLYVRMVSEAVASYKGEEPQELADLKVELPIDAHVPHDYI
AHERLRLEAYTKLSQAGDQTAIDAVREELVDRYGPVPEPVERLFAVAGLRVKARAAGLAD
ITAQGKFIRFAPVELAESAQLRLKRLFPGTVLKPAVRTILVPTPMTSRVGGQPLRDQALL
TWVGELIDAVIAPDATVAAAATVAARS
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgactttgaccggcgtgctctccgccttccgtgccgacgacggcgtccgcgagctcgtc
gaggcggtctccacccgcgggaccctcgacatcactgcttccgtgggcgcccgcgccccg
atgctcgccgaattggctgcccgcggtggccgaaccctcgtggtgaccgtcgcgaccggg
cgggagggggacgagctcgccgctgcgctcggcgcctatctcgaccccgccggggtcgcg
gtgttcccggcgtgggagaccttgccccacgagcggctctctccccgcagcgacacggtc
gcgcgccgcatcgctgtgctccgccggctggcccaccccgacgccgtcggtgaccacgcc
gggggagcagcggggtcgggcgccccgatcagggtgctgatcgttcccgtgcgcgcgatg
ctgcagccggtggtcgccggcctgggcgacctcgagccggtcgcgctgcgtccgggcgac
acggctccgatggaggaggtcgtcgagcggctcgtcgccgccgcctacacccgggtggac
atggtcgagcgccggggcgagttcgccgtccggggcgggctgctggacgtgttcgcgccc
accgaggcccacccgcagcgcatcgagttctggggtgatgacgtcgaggagatccgctgg
ttctccgctgccgaccagcgctccctggaggtcagcgaggacggtatgtgggcgcccccc
acccgggagatcctgctgaccgaggccgtgcgtgcgcgtgccgctgcgctgatgcccacg
ctccccggcgccgccgagatgctggagaagctcagccagggcatcgccgtggatgggatg
gaatccctggccccggtgctggtcgaggagatggtgcccttcctcgacctggtccccgac
gacgccctgctcatcctgcacgaccccgaacgcatccgccgccgcgcgcacgatctggtg
gcgaccaccgaggagttcctcgccgccgcctggacctccgcggccgccggggccaacacc
ccgatcgatctctccggcgccagcttcgccaccctggccgatacccgcgacatcgcccgc
cgccgtggcctcggctggtgggccgtcggcggcttcgccaccgacgccgaactggcggag
ctcgccgaggccgctgatccggcgggggagaccgatggtgccgacgacgacgccgaggca
tccgtggtcgtgcgcagccgggacgtccacggctaccggggcgagaccgcacgcgcggtc
gccgacctcaaggagctcaccacccagtcctggcgcctcgtgctcgtcaccgagggtgcc
ggcccggcgcgccggatggtcgaacagctcctcgaggccgacgtccccgcccggctggtc
gccgagatcaccccggccgggcccgaggcgagggagggcgaggacccggaccttccgccg
tcgggcgtggtgctggtgaccacggccagcatcgggcgcggattcgtggccgaggagctg
cgcctcgcggtcttcaccgaggcggacctgaccggccgacccggcacctccacccgcgac
atgcgcacgatgccctccaagcgccgcaatgtggtcgacccgctggcgctgcggcccggg
gaccacgtggtgcacgagcagcacggagtgggccggttcgtcgagctgatccagcgcacc
gtcggcgtgggcaagtccgccgtcacccgcgagtacatggtcatcgagtacgccgcctcc
aagcgggggcacccgggggaccggctgttcgtccccaccgactccctggaccaggtcacc
aagtacaccggtggcgagtcgcccagcctgaacaagatgggcggctcggactgggccaag
accaagggccgtgcgcgccgcgcgatcaaggagatcgccggcgagctgatccgcctgtac
tcggcgcggatggccaccgaggggcacgccttcgcccccgacaccccgtggcagcgcgag
ctcgaggatgccttcgccttcgtggagaccccggaccagctctccagcatcgaggaggtc
aaggccgacatggagaagccggtcccgatggaccgtctcatctccggcgacgtcggctac
ggcaagaccgagatcgcggtgcgcgccgcgttcaaggccgtgcaggacggcaagcaggtg
gccgtgctggtgcccaccacgctgctggtgcagcagcacctggacaccttcagcgagcgc
tacaccggcttcccggtgaccgtgaagtcgctctcccgcttccagagcgccgccgaggcc
gaggcggtgcgcgagggggtgcgcaccggcgccgtcgacgtggtgatcggcacgcaccgg
ctcatcaccggtgaggtgcgcttcaagaacctcgggctggtcgtggtcgacgaggagcag
cgcttcggcgtcgagcacaaggagaccctcaagcagctgcgcaccaacgtggacgtgctc
gccatgtccgccacgcccatcccgcgcaccctggagatggcggtcaccggcatccgcgag
atgtccaccctcgccaccccaccggaggagcggcacccggtcctgacctacgtcggtgcc
tacgccgagcggcagatcacggccgcgatccggcgcgagctgctgcgtgagggccaggtg
ttctacgtccacaaccgcgtggagtccatcgaccgggcggccgcgcggctgcgtgagctc
gtccccgacgcccggatcgcggtggcgcacgggaagatgaacgagcacgagctggagcgc
gtgatcgtcgacttctgggagaagcggttcgacgtgctggtgtgcaccacgatcgtcgag
accgggctggacatctccaacgccaacaccctgatcgtcgaacgtgccgacaacttcggt
ctgtcccagctgcaccagctccgcggccgggtgggccgcgggcgcgaacgggcctacgcc
tacttcctctacccgccggagaagccgctcaccgagaccgcccacgagcggctgcagacg
atcgcggcgcacaccgatctcggcgccgggatccaggtggcgatgaaagacctggagatt
cgtggcgcgggcaacctgctgggcggggagcagtccggccacatcgccggtgtcggcttc
gacctgtacgtacggatggtctccgaggccgtcgcctcgtacaaaggtgaggagccacag
gagctggccgacctcaaggtcgagctgccgatcgatgcccacgtcccgcacgactacatc
gcccacgaacggctccggctggaggcctacaccaagctctcccaggcgggcgaccagacg
gcgatcgacgccgtccgcgaggagctggtggaccgctacggtccggtgcccgaaccggtg
gagcggttgttcgccgtcgccggactgcgggtgaaggcccgcgccgcgggcctggccgac
atcaccgcccagggcaagttcatccggttcgccccggtcgagctcgccgagtcggcccag
ctgcggctcaagcggctgttcccgggcacggtgctcaagccggccgtccgcaccatcctc
gtgcccacgccgatgacctcacgcgtgggcgggcagccgctacgcgaccaggcactgctg
acctgggtgggcgaactgatcgatgcggtgatcgccccggatgccaccgtcgccgccgcg
gcgacggtggcggcacggtcctga
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