Ruania suaedae: LQF12_09665
Help
Entry
LQF12_09665 CDS
T08275
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rsua
Ruania suaedae
Pathway
rsua03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rsua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LQF12_09665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsua03400
]
LQF12_09665
Enzymes [BR:
rsua01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LQF12_09665
DNA repair and recombination proteins [BR:
rsua03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LQF12_09665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UFU01787
LinkDB
All DBs
Position
2090578..2093070
Genome browser
AA seq
830 aa
AA seq
DB search
MTGTETITQVDGRRLRLTNLGKVLYPATGTTKADVVTYYSRVAPVMVPHCAGRAATRKRW
VNGVGTAAEPGQVFFTKNLDSGTPDWVARADLQHSDHTNTYPLVNDRATLVWLAQMASLE
VHVPQWRFDSAGRPRHPDRIVFDLDPGPGVTLPEVAEVARWIRTVLAGLGWDCVPVTSGS
KGIHLYAPLDGAHDAGQIRALARELALSLEADHPDVVTAQMAKLARPGKVFIDWSQNHPN
KTTVAPYSMRGRETPTVALPRTWAELEDPGLRQLEMAEVLGRLDEGGEDPMAALELAAHG
ITAADTSVVGGDALAPYRGMRAPDRTPEPVPRSSPMPGGPRVFVIQEHHASRLHWDLRLA
DDGVLVSWAVPKGMPTDPTRQHLAVQTEDHPMEYLTFSGTIPRGEYGAGEMSIWDTGSYE
VLKWRAGAEIIVALTGQPEGGLASTTGRTSTFALIHTGGRSDTSGQERHWLLHLMTGRSR
TEKAARGRPTAGTQESTAAPAAPVPAPPVQVAPPPAPMLATGGSAADVGPDWSMEMKWDG
QRCVARVADGVVRLWARSGREITGAYPELAELAGAVGPEAAVLDGEIVALDASGRPSFSL
LQPRMQVGRDADARALAQRRPVHLMLFDVLEAGGRDVTGEPYLRRREILTGLVRPTRRIQ
VPPAFEGDLEGAMAASRQWGLEGVVAKRADGLYLPGRRSSGWVKLKHTESVEVVVGGWRP
GQGGRSGSVGSLLLGVRSTGGGWRYVGRVGTGFSEKDARAWVDRFAAQEIAEAPFEQVPA
LDARGARWLRPEQVAEVEFGEWSPAGRLRHPRWRGWRSDLDVGDLRPPQT
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgaccggcacggagacgatcacccaggtcgacggccggcgcctgcggctgaccaacctc
ggcaaggtcctctacccggccaccgggaccaccaaggccgacgtcgtgacctactactcc
cgggtggcgccggtgatggtgccccactgcgccgggcgtgcggccacccgcaagcggtgg
gtgaacggcgtcggcacggcggccgagcccggtcaggtcttcttcaccaagaacctcgac
tccggcacgccggactgggtggcccgcgccgatctgcagcactccgaccacaccaacacc
tacccgctggtcaacgatcgcgcgaccctggtctggctggcccagatggcctcgctcgag
gtgcacgtgccgcagtggcggttcgactccgccggccggccccgccacccggaccggatc
gtcttcgacctcgatcccgggccgggcgtcacgctgcccgaggtggccgaggtggcgcgg
tggatccgcacggtgctcgccggcctcgggtgggactgcgtgccggtcaccagtggctcg
aagggcatccacctgtacgccccgctggacggcgcccacgatgccgggcagatccgcgcc
ctggcccgcgagctggccctcagcctggaggccgaccaccccgacgtcgtcacggcacag
atggcgaagctggcccggccgggcaaggtgttcatcgattggagccagaaccacccgaac
aagacgacggtggcgccctattcgatgcgcgggcgcgagaccccgacggtggccctcccc
cgtacctgggccgagctggaggacccggggctgcggcagctggagatggccgaggtgctc
ggacgcctcgacgagggcggggaggacccgatggcggcgctggagctggcggcgcacggc
atcacggccgccgacacctcggtggtgggcggggatgcgctcgcgccctaccggggtatg
cgtgcgccggaccgcacccccgagccggtcccccggagctcgccgatgccgggcggaccg
cgggtcttcgtcatccaggagcaccatgccagccggctgcactgggacctgcggctggcc
gacgacggcgtgctggtcagctgggccgtgccgaagggcatgccgaccgatcccacccgg
cagcacctggcggtccagaccgaggaccacccgatggagtacctgaccttctcgggcacg
atcccgcgcggggagtacggcgccggcgagatgagcatctgggacaccggtagctatgag
gtgctcaagtggcgggccggcgccgagatcatcgtggccctgaccggacagccggagggc
ggactggcctccaccacgggacgcacctcgacgttcgcgctcatccacaccgggggccgc
tccgacacctccgggcaggagcggcactggctgctgcacctgatgacgggccggtcccgc
accgagaaggcggcgcgcggccggcccacggcgggcactcaggagagcacggcggctccc
gctgccccggtaccggctccccctgtgcaggtcgctcccccgccggcgccgatgctcgcc
accggcgggtccgctgccgatgtcgggcccgactggtcgatggagatgaagtgggacggc
cagcgctgcgtggcgcgtgtggccgacggagtcgtgcggctgtgggcccgcagcgggcgc
gagatcaccggcgcgtatcccgagctggccgagctcgccggcgccgtcggacccgaggcg
gcggtcctggacggggagatcgtcgcgctcgacgcctccggccggccctcgttctcgttg
ctgcagccgcggatgcaggtgggacgggatgccgacgcccgcgcgctcgcccagcgccgc
ccggtgcatctgatgctcttcgacgtgctcgaggccggcgggcgggacgtgacgggcgaa
ccgtacctgcgccgtcgggagatcctcaccggcctggtgcggcccaccaggcggatccag
gtgccgcccgccttcgagggcgacctcgagggggcgatggccgctagccggcagtggggc
ctggagggggtggtggccaagcgggcggacgggctctacctgccggggcgccgctccagc
ggatgggtcaagctcaagcacaccgagtccgtggaggtggtggtcggcgggtggcggccc
gggcagggcggtcggtccggctcggtgggctcgctgctgctgggcgtgcgctccaccggc
ggcggctggcgctacgtgggccgggtggggacgggcttctccgagaaggacgcgcgggcg
tgggtggaccggttcgccgcgcaggagatcgccgaggccccgttcgagcaggtcccggcc
ctcgacgcccgcggggcgcggtggctgcgcccggagcaggtggccgaggtggagttcggc
gagtggtcgcccgcgggccggctgcgccatccgcggtggcggggctggcgctccgacctc
gacgtcggtgatctgcggccgccgcagacctga
DBGET
integrated database retrieval system
