Rhizobium sullae: N2599_34510
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Entry
N2599_34510 CDS
T08545
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rsul
Rhizobium sullae
Pathway
rsul03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rsul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
N2599_34510 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsul03400
]
N2599_34510 (ligD)
Enzymes [BR:
rsul01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
N2599_34510 (ligD)
DNA repair and recombination proteins [BR:
rsul03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
N2599_34510 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UWU19346
LinkDB
All DBs
Position
pWSM1592_2:complement(95361..96425)
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AA seq
354 aa
AA seq
DB search
MMKPPRSKPLLRDTEAPIRSRPRGKRNPAQPQLPFDPMPERVEPALAQLKSHPPKGSEWS
WELKWDGYRLAVHIEPRGIRILTRGGHDWTHRFPAIEQAARALGSATMIIDGEAVVLDEE
GRPDFGLLQQSLGASGKQTGNRASDAVLYAFDLIYLDGHDLRGVEYRSRRHLLEDTLNVA
NNDEAGSIRLSETLDAEPTVLLEHICRLGLEGIVGKHLDRPYRSGRTGDWVKVKCVQSEA
FFIVGYERSTASPAAFGSLVLAAYRGADLVHVGSVGTGFRQAEIIRLRKMLDTLRWKRKQ
PPLPYSGSADVIWVQPTLIAEIEFRAWSTDGKLRHPSYKGLRERQDNADVFRLG
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagcctccgagatcaaagcccctccttcgtgacaccgaggccccgatccgttcc
cggccgcgaggcaagcgaaatccagcccagccacagctccctttcgatcccatgcctgag
cgcgtcgagcctgcgctggcgcaattgaagtctcatcccccgaagggaagcgaatggagt
tgggagctgaaatgggatggctatcgccttgccgttcatatcgaaccgcgggggatccgg
atcctcacgcgtggcggacatgactggacgcatcggtttccggcgatagagcaggccgcc
cgagcgctcgggtcggcgacgatgatcatcgatggcgaggcggttgtgctcgacgaagag
ggccggccggatttcgggctgctgcagcaatcgctgggcgcatccggcaaacaaaccggc
aaccgtgcctccgacgccgtcctttacgctttcgatcttatctatcttgatggccacgat
ctgcgcggtgtcgaataccggtcccgacggcaccttctcgaggacacgttaaacgtcgca
aacaatgatgaagccggctccattcggctatcggaaacactcgatgccgaaccgactgtc
ctcctggagcatatctgccgcctcggcctggaaggcatcgtcggcaagcacctcgatcgg
ccctatcgttccggccgaaccggcgattgggtgaaagtcaaatgcgtccagagcgaggcc
ttcttcattgtcggctatgagaggtcgacagcgtcccctgccgccttcggctctttggtg
ctcgccgcctaccgcggagccgacctcgtccacgtcggaagcgtcggcacgggcttcagg
caagccgagatcatcaggctgcggaagatgctggacacgctgcgatggaagcgaaagcag
ccgcctctgccctattccggaagtgccgatgttatctgggtccagcctacgctcattgcc
gagatcgagtttcgcgcctggtcgacagacgggaaacttcgccatccatcctacaagggc
ctgcgagagcgccaggacaatgcagacgtcttccggctcggctag
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