KEGG   Rhizoctonia solani: RhiXN_05652
Entry
RhiXN_05652       CDS       T09256                                 
Name
(RefSeq) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
rsx  Rhizoctonia solani
Pathway
rsx03030  DNA replication
rsx03410  Base excision repair
rsx03420  Nucleotide excision repair
rsx03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rsx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RhiXN_05652
   03410 Base excision repair
    RhiXN_05652
   03420 Nucleotide excision repair
    RhiXN_05652
   03430 Mismatch repair
    RhiXN_05652
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rsx03032]
    RhiXN_05652
   03400 DNA repair and recombination proteins [BR:rsx03400]
    RhiXN_05652
Enzymes [BR:rsx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RhiXN_05652
    6.5.1.6  DNA ligase (ATP or NAD+)
     RhiXN_05652
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     RhiXN_05652
DNA replication proteins [BR:rsx03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    RhiXN_05652
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     RhiXN_05652
DNA repair and recombination proteins [BR:rsx03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     RhiXN_05652
   NER (nucleotide excision repair)
    Other NER factors
     RhiXN_05652
   MMR (mismatch excision repair)
    Other MMR factors
     RhiXN_05652
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Salp15
Other DBs
NCBI-GeneID: 67027931
NCBI-ProteinID: XP_043180900
LinkDB
Position
6:complement(join(613652..613738,613793..613882,613936..614283,614338..614568,614639..614821,614877..614972,615033..615234,615282..615357,615417..615591,615655..615756,615809..615949,616005..616215,616272..616650,616712..616816,616877..616909,616966..617073,617122..617230))
AA seq 891 aa
MKPAPAQQASLSEFLGAKGGAKSKASTKDKESSGSKTSKVSSKPKQEVKSEKIATESVKA
AEPTEGMEVDQPERKVLSDDDDEAPVRKRVKRNRVDLGSDEGSDGGGVSTVRRLTKRKAI
STRDEDESSPPPISSAPPSSPPPDDPTPSSPPKKSRAKSSSGPNKPEKTSKASKKDATDV
APKASLPPQDKNEKEVEEIEAASDEDLVDEEGASKRKNKEVASKTAELALAKMKDVDFGW
KDGETVPYAALAQAFSLIEATTKRLEITAILTAFLTLVIRRATAKPTTKTQSKDKEPVTS
GHQDVLQCVYLCINRLAPDYTGIELGIGESLLVKAIGESTGRKIDAIKDELKKEGDLGLV
AMNSRAMQKTLWKPKPLTLPAVFKSLLEIAQSTGHSSQNKKIGIITKLLAACLPDHAEAK
YIIRSLEGKLRIRLAERTVLVALAQACVLAANYEDVEKWSKEDLGAKCDEGVEILKAVYS
EIPSYDIVIPALLMGGMDSLRETCKLTPGIPLKPMLAKPTKAIGEVLDKFENTKFTCEYK
YDGERAQVHRLEDGTVAVFSRNSEDMSKKYPDLVEQLPRCFKESTKSFVLDAEAVAIDKT
TKKLLPFQELSKRKRKDVKVEDIQVRVCLFGFDLLYLNGESLLRKTLEERRKLLREHFTE
VDCEFAFAKASDGETTEEIQVFLEESVKDGCEGLMVKTLTGDASRYEPSRRSVNWLKLKK
DYLAGIGDSLDLVVVGAYYGKGKRTKVYGAFLLACYDPDAEEYQTICKIGTGFSDEALAA
HYAQLQPLEQPKPWGNVKIGGAKPDIWFEPKVVWEVLTADLSLSPVYEAARGLVDDRGIS
LRFPRFIRVRDDKSADDATEPSQIAEMYERQSLAQNGPGKKKRGGEDDDFW
NT seq 2676 nt   +upstreamnt  +downstreamnt
atgaagcctgcacctgcacaacaagctagtttgtcggaattcttgggagcaaagggtgga
gctaaatccaaggcgagcaccaaggacaaggagagcagtggatctaaaacatccaaagtc
tctagtaagccgaagcaggaggttaagtccgagaaaattgccaccgagagtgttaaagca
gccgaacctactgaaggtatggaagtggaccaaccagaacgtaaagtactctcagatgac
gatgacgaagcgccagttcggaaacgggtcaaacgtaatcgggttgacttgggctcagat
gaaggctccgatggcggcggagtatctaccgtacgtcgtctgacgaaacgtaaagctatt
tccaccagggatgaagacgaatcatctccacctcccatatcttccgcccctccatcatcc
ccaccgccagatgacccaaccccatcatcacctcccaagaaatccagggcaaagtcttca
tcgggccccaataaacccgaaaaaacgagcaaggcatcaaaaaaggacgccaccgatgtt
gctcctaaagcttcgttgccaccccaagacaaaaacgagaaagaagtagaagagatagag
gccgcctccgacgaagatttggttgacgaggaaggtgctagtaagcgaaagaataaggaa
gtagccagcaagacagccgagctggcgctggcgaaaatgaaggacgtggactttggctgg
aaggatggagaaaccgttccatatgccgcgcttgctcaagcgttctccttgatcgaggca
accaccaagcgattggagatcaccgctattctaacagcattcctaactctcgttattcgg
cgcgctactgccaaaccaacaactaagacgcagtcaaaggataaggaacccgtcacgagt
gggcaccaagatgtgctgcagtgtgtttatttgtgcatcaaccgactcgctccagattac
acaggaattgaactggggatcggtgaatccttactagtcaaagccattggcgagtccaca
ggacgcaagatagatgcaatcaaagacgagctcaagaaagaaggtgaccttggcttagtt
gcaatgaattcacgagcgatgcaaaagactctatggaaacccaagcccctaacgcttcct
gccgtattcaaaagtctcctcgagattgcccagtcaactggacactctagccaaaacaag
aagatcgggattatcacaaagctccttgccgcctgcttgccggatcacgccgaagccaag
tacattattcgtagtctggagggaaagctacgtatccgcctagcagaacgcacagtattg
gttgcacttgcccaggcctgtgtattagccgctaattatgaagatgttgagaaatggtcc
aaggaagatttgggagccaagtgtgatgagggcgtagaaattctgaaggccgtatacagc
gaaattccttcttatgatatcgttatccctgcacttcttatgggtggtatggattcgctg
cgagaaacgtgcaagcttacacccggtattccactcaagcccatgcttgcgaagccaacc
aaggccattggggaagtattggataaatttgagaataccaaatttacttgcgaatacaaa
tacgatggcgaaagggctcaggtgcatagactcgaagatggtaccgtcgcagtgttcagc
cgcaactcggaagacatgagcaagaagtatcctgaccttgttgaacaacttcccaggtgc
ttcaaagaaagcaccaagtcgtttgtactggacgcggaagcagtggccatcgacaagacg
acgaaaaagttgcttccgttccaagagctaagcaaacgtaaacgtaaggatgtcaaggta
gaagatattcaagtccgcgtgtgtctctttggcttcgatttgctttaccttaatggagag
tcgctcctccggaaaacgctcgaggaacggagaaaactgctccgcgagcattttactgag
gttgattgcgaatttgcatttgctaaggcctcggatggagaaacaaccgaggagatccag
gttttcctcgaagagagtgtgaaggatggatgtgagggtttgatggtcaaaactctgaca
ggggacgcgagtagatacgagccgagccgaagaagtgttaactggttgaagcttaaaaaa
gattatctcgcaggtattggagattctctcgacctggttgtagttggggcgtactatgga
aaaggaaaacgcaccaaggtttacggtgccttccttctcgcctgctacgaccctgacgcc
gaagagtaccaaacaatttgtaaaattggtaccggattttccgacgaggcactcgcagct
cactacgcccaacttcagccccttgaacagcctaagccttggggcaacgtcaagataggt
ggggccaagcccgacatttggttcgagcctaaggtcgtttgggaggtattgaccgccgat
ctcagcttgagcccggtgtacgaggcagcaagaggcttggtcgatgacagaggaatctcg
ttgcgattccctcgattcatccgcgtcagggacgacaagtcagcggatgacgcgacggaa
ccatcacagatcgcagaaatgtacgaacgacagtcgttggctcagaacgggcctggaaag
aagaagcgaggaggcgaagatgacgacttttggtaa

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