Raphanus sativus (radish): 108812587
Help
Entry
108812587 CDS
T06014
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108812587
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108812587
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108812587
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108812587
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108812587
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf-C2H2_4
Kinase-PPPase
Motif
Other DBs
NCBI-GeneID:
108812587
NCBI-ProteinID:
XP_018440384
UniProt:
A0A6J0K089
LinkDB
All DBs
Position
6:complement(49266678..49271328)
Genome browser
AA seq
943 aa
AA seq
DB search
MENSRRPFDRSRDPGPIKKPRLISDAEPIRPVNSNARQFPPQRQLGGGAAAGVGVPPAAA
STSRFRAAGGGGGRETESSSEAYEPQLVHPHYELVNQYKSALSELTFNSKPIITNLTIIA
GENVHAAKAVVSTICNNIIEVPSDQKLPTLYLLDSIVKNIGRDYIKYFAARLPEVFVKAY
RQVDPPMRSNMRHLFGTWKGVFHPQILQQIEKELGFNARSDGQAVAVNAGRTDLQSQRPP
NSIHVNPKYLERQRLQQTGRVSKTKVMVTDVPEVASNLTRDPERLERVSSTASGGLWAGP
AKVNTIRRSQKDSLSEPLYEKDIESIAEEYDYASDLPHNARSVVKKVGPRITDDGSGKQW
YEAMSRGPDLISDQREGLHTKSRMSNYATARLENSESSGPSRNIGVTYDSWKNSEEEEFM
WDMHSRLSETDVATINPKIEFQDPDESERLASKNHLLKRPRYSAIDPRLDPEKYSSEQKD
PSILGPWTSSPRSLHDSEVLPSISATSNAARKGIQPQSRIASSGILPMSDRQSTTKQNVT
KQDFGRAHSLPQRDPRASRFPAKSQSDSVRPLSSSSQSKNTNKLELPDASPVGKFDSKST
AENARGQANMNDLLAAVMKSGILSNNATCGGSKEEMSPNEVDPRALTLSAVAKLKTLPTS
VAGAVSLTGVTSAQTSKENSKASDPISCLLSSLVSKGLISASKTEVPSLAQSAAPSVSQD
HSPDHSTSSSMSVVPSEAQPVVLVKKDPSTAPKVAPPEIEKLEPENLIGLKFRADKIREL
HPSVISSLFDDLPHLCTSCGVRLKQKEELDRHMEELHEKKKLELNGTNTKCRVWFAKADD
WIAKSGEVEPEYEEVLSEAESAAEDGPAVAADENQYACILCGEMFEDYFSQEMDQWMFKG
VSYLNIPPAESDANGPIVHAACLTKSSLPGLGVGNAIKQEIIE
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggagaattcgcgtcgaccgtttgatagatccagagatccagggccgattaaaaagccc
aggctcatcagcgatgctgaaccaatccgtcctgtgaattccaacgcgcgccagtttccg
ccgcagagacagctcggtggtggtgcggcggcgggagtgggagttccacctgcggcggcg
tcgacgtcaaggtttcgagcagctggtggtggtggggggagagaaacggagagtagtagc
gaggcctatgagccgcagctggttcatccgcattacgagcttgtgaatcagtataagtcg
gcgttatccgagctcacgttcaactccaagccgatcataacgaacctcacgataattgct
ggggagaatgttcatgccgctaaggccgttgtgtccactatttgcaacaacatcatagag
gtaccaagtgatcagaagctgccaacattgtacctgttggacagcattgtgaagaacatt
ggaagggattacattaagtactttgctgccaggctgcctgaggtatttgttaaagcttac
agacaagttgaccctcctatgcgttctaatatgcggcatctctttggaacctggaaagga
gtctttcatccgcaaatacttcagcaaattgagaaagaacttggctttaatgctagaagt
gatggtcaagcagttgctgttaatgctggcagaactgatctgcaatctcagcgaccacca
aatagcatccatgtgaatcccaaatatctagaaaggcaacgactccaacagacagggcgg
gtaagcaaaacaaaagtaatggttacggatgtccctgaggtcgcatccaatttgactagg
gatccagaaagactggagagagtttcaagcacagcatctggaggcttgtgggcaggtcca
gccaaagtgaataccattagacgatctcaaaaagattcactcagtgaacccctctacgag
aaagacatcgagtcaatagcagaggaatatgactatgcttctgatctaccgcataatgct
agatcagtggttaagaaagttggtccaaggattactgatgatgggagtggaaaacaatgg
tacgaagctatgagcaggggtcctgatctgatttctgaccagagggaagggttacacacc
aaaagcagaatgtccaactacgctactgcgagactagaaaattcggaatcaagtggtccc
agtagaaatataggcgtgacttatgatagttggaaaaactctgaggaagaagagtttatg
tgggacatgcactcaaggttatccgaaacagatgtggccactatcaacccgaagattgaa
tttcaagatccagatgaatcagagagactggcatctaaaaatcacctcttaaaacgacca
agatattcagctatcgacccaaggcttgatccggagaagtattccagcgagcaaaaagat
ccaagtattcttggcccctggacgtcttctcctagatctttgcatgactcagaagttctt
ccttctattagtgcaacctctaatgcagctagaaagggaattcagcctcaatctaggatt
gctagctctggaattttgccaatgtcagataggcagtcaaccactaaacagaatgtgacc
aagcaagattttggaagagctcactccctccctcaacgtgatcctagggcttcccggttt
cccgcaaaatctcaaagtgactccgtacggcccttatcttctagtagccagtctaaaaac
acaaataagcttgaactacctgatgcatctccagttggaaagtttgactctaagtcaaca
gctgaaaatgctcgaggacaagccaacatgaatgatttgttggcagctgtcatgaagagt
ggaatcctttctaataatgcaacttgtggtggaagcaaggaggagatgtctccaaacgag
gttgacccaagggcactaaccctgtcagcagtcgctaagctgaaaactttgccaacttca
gtggctggcgcagtgtctcttactggtgtcacatcagcacagacatcaaaagagaatagt
aaggcctcggaccctatttcgtgcctcttgagctccttagtttcaaagggcttgatatct
gcttcaaagacggaggtgccatctctcgctcaatctgcggctccttccgtttcacaggac
cacagtcctgatcattctactagtagctctatgtctgttgttccatcagaggctcagcca
gtggttctggtgaagaaggatccttccactgccccgaaggtagcaccaccggaaatagaa
aaattggaacccgaaaacctcataggattgaagttcagagcagataaaatccgtgaactt
cacccttcggtgataagtagtctctttgatgaccttccacatctctgcacctcctgtggc
gttcgtcttaagcaaaaggaagaacttgacaggcacatggaggagctgcacgaaaagaag
aagctcgagttaaatggcacgaacactaaatgtagggtttggtttgcaaaggctgatgac
tggatagcgaaatctggagaggtagaacctgaatatgaggaagttctgagtgaagccgag
agtgcagctgaggatggtccagccgtagctgctgatgagaaccagtacgcatgtatatta
tgtggagagatgtttgaggactatttcagtcaagaaatggatcaatggatgttcaaggga
gtttcttacttgaacattcctcctgctgagagtgacgcgaatggaccgatcgtgcacgcc
gcttgtttgaccaagagttctttaccgggcttgggagttgggaatgcaatcaaacaggaa
attattgagtag
DBGET
integrated database retrieval system
