Raphanus sativus (radish): 108812739
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Entry
108812739 CDS
T06014
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03015
mRNA surveillance pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108812739
09123 Folding, sorting and degradation
03018 RNA degradation
108812739
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108812739
03041 Spliceosome [BR:
rsz03041
]
108812739
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108812739
mRNA cycle factors
Stress granule specific factors
108812739
Spliceosome [BR:
rsz03041
]
Complex C
Other components
Complex C specific factors
108812739
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_occluded
RRM_3
Motif
Other DBs
NCBI-GeneID:
108812739
NCBI-ProteinID:
XP_018440587
UniProt:
A0A6J0JY17
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All DBs
Position
6:complement(43011296..43014413)
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AA seq
643 aa
AA seq
DB search
MAQASPPLPPPQVTEGTVAAPDGVNLGSMCSLYIGDLDVSVTDSQLYDYFTEVCPVVSVR
VCRDSATNASLGYGYVNYTNIDHAEKAMKALNYTSLNGKMIRVTYSTRDSAARKSGVGNL
FVKNLDKSVDNKTLHETFSECGSIASCKVATDHMGQSRGYGFVQFESEDSAKTAIEKLNG
RALNGKELFVGPFLKKEERESSAGGDKTKFTNVFVKNLSETTDDDELKTTFGQYGGISSA
VVMRDGDGRSRCFGFVNFEDADDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRH
DEGVRENGNRFDGLNLYVKNLDETVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVA
FSATSEASRVLNEMNGKMVSGKPLYVALAQRKEERRAKLQAQFSQMRPAFIPAMSPRMPM
FPGVAPGIGQPMFYSQVPPAVIPLNQAGFGYPPPPQMVPGMRPGFFGPMMQQVGPRPGGR
RPGDGPIRHHQPQQPMPFMQPQMMMPRGRGHRYPPGRNMPDEGPMPGPFPPYDVNGVPLG
QHMPAGTASLASSLAQASPAQQRTMLGEALYPLVDQIEHENAAKVTGMLLEMDQTEVLHL
LESPEALNAKVSEALDVLRNVNQPTQVSASPSDLLASLTINDH
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggcacaggcttctcctcctcttcctcctcctcaggttacagagggcacggtggctgct
cccgacggagtgaatctgggctctatgtgttcgctctacatcggagatctggatgtcagc
gtcactgactctcagctctacgactatttcaccgaggtctgcccggtcgtttccgtccgc
gtttgccgtgactcagccaccaatgcttctcttggatacggctacgtcaactacaccaac
atcgatcatgctgaaaaggcaatgaaggcgctgaactacactagtctgaatgggaagatg
atcagggttacttactctactcgtgactctgctgctcgtaaaagtggcgttggcaactta
ttcgtcaagaatttggacaagtcagttgacaacaagacactgcacgagacgttctcagag
tgtggaagcattgcctcctgcaaggtcgctactgatcacatgggccagtccagaggatac
ggttttgtgcagttcgagagcgaggattcggctaaaaccgctatcgagaagctcaacggt
agagccctcaacggcaaagagcttttcgttggacctttcctcaagaaggaggagcgagag
tcttctgctggtggtgataagacgaagttcaccaatgtctttgtcaagaatctgtcggag
acgacggatgatgatgagctgaagaccactttcggacagtacggtggtatctcgagcgcg
gtggtgatgagggacggagatgggaggtccaggtgtttcgggttcgtcaacttcgaggac
gctgatgacgcggctcgtgctgttgaggcccttaacgggaagaagtttgatgacaaggag
tggtatgtggggaaagctcagaagaagtctgagagggagcttgagttgagcagaagacat
gatgaaggcgtgagggagaacggaaacaggtttgatggtttgaatttgtatgttaagaac
cttgacgagacggtcacggatgaaaagttgcgtgagctgtttgctgagtttggtacaatc
acttcctgcaaggttatgagagaccctagtggtactagcaaaggatcaggatttgttgcc
ttttctgctaccagtgaagcttctagagtgctgaacgagatgaatggtaaaatggttagt
ggcaaaccattgtatgtggctcttgcacaaaggaaggaagaaagaagggctaagctgcag
gcacagttttctcagatgagacctgcctttatccctgctatgagtcctcgtatgcctatg
ttcccaggtgttgctccaggtattggacaacccatgttttacagtcaagtgcctccagca
gtcatccctctgaaccaggctggattcggatatccgcctccgcctcagatggttcctgga
atgaggccaggcttcttcgggccgatgatgcagcaagtaggcccacgaccaggtggaagg
cggcccggtgatggacccatacgccaccatcagcctcagcaaccaatgccctttatgcag
ccacagatgatgatgccaagaggacgtggacaccgttaccctcctggtagaaacatgccc
gacgaaggtccaatgccaggaccatttccaccttatgacgttaatggagtgcctcttggt
cagcatatgcctgctggtactgcttcactggcttcttcccttgctcaagcttcgcctgct
cagcagagaactatgctgggagaggctctatacccattggtggatcagatagagcacgag
aacgcagccaaagtgacgggtatgcttctggagatggatcagaccgaagttttgcatctg
ctcgagtcgcctgaggctctaaatgctaaagtttcagaggcattagatgtgctgagaaac
gtgaatcagccaactcaggtgagtgcaagcccaagtgatctcttggcttcacttaccatt
aatgatcactga
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