Raphanus sativus (radish): 108816561
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Entry
108816561 CDS
T06014
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03013
Nucleocytoplasmic transport
rsz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108816561
03015 mRNA surveillance pathway
108816561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108816561
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108816561
mRNA cycle factors
P-body specific factors
108816561
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
108816561
NCBI-ProteinID:
XP_018444966
UniProt:
A0A6J0KBX3
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Position
1:16141723..16145006
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AA seq
471 aa
AA seq
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MMKDPIAKRKVVVRHLPPSLSESDLLSQIDSRFGDRYYWFSFRPGKSNYKSQKHSRAYFG
FKAPEDVYDFAAFFNGHVFVNDKGAQFKAIVEYAPSQRVPKPCDKKDPREGSITKDPDYL
EFLKLISQPVENLPSAEIQLERREAELSGASKSAPIVTPLMEFIRQKRASVIGSQGLLDG
RRGGRRARAVSANKPSSRPTKRNSEKKKYVEKDNSKGVGSSKQDYNQANSSGKDIPATET
ASVMDSSLPGISLTMDSGKKKILLLKKDRDNPVNTPPQQEQQMEANLSGSSSTSRQNQKI
DVGGRLIKGILRRNETRPSQASSFVQPEERVEPTEAENSKRPPRPSNTRAGKDYHVSGTN
SEKLERRARNKDRPDRVVWAPRRADGSNISEDQPTSSAANNGEVVNSSGGHTLENGSARH
SSRRSGARNRKEDGFAMTIEGKTPRRGGGGGGGGPSSHEKQKWIQKSSSGT
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaggaccctatagcgaagaggaaggtggtggtaaggcacttgccgccttctctt
tctgagtccgatctcttatcccaaatcgactctcgtttcggtgatcgttactattggttc
tcctttcgtcctggcaagtccaactataaaagtcagaagcattcacgggcctactttggt
ttcaaggcaccagaagatgtttatgactttgctgcctttttcaacggccatgtctttgtt
aatgacaagggtgctcagttcaaggccatagttgaatatgcgccttcacagcgtgtcccc
aaaccatgtgacaagaaagatcctcgtgaaggctctattaccaaagaccctgattatctt
gaattccttaagcttatttctcaacctgtcgagaatctccccagtgctgaaatccagttg
gagaggagagaagctgagctgtctggtgcttcaaaatcggctcccattgttactcctctt
atggaattcatacgtcaaaaacgtgcttctgtgattggatcccagggtttattggatggt
cgaagaggaggcagaagagccagagcagtctctgcaaacaagccaagttcgagacctacg
aaacgaaactctgaaaagaaaaagtatgtggaaaaagacaattcaaaaggtgtgggcagc
tccaagcaagattacaatcaggcaaattcaagtggaaaagacataccagcaactgaaact
gcctctgtcatggatagctctctcccagggatttcattgactatggattctgggaagaaa
aagatcttgctcctgaaaaaagaccgtgacaaccctgttaatactccaccacaacaggaa
cagcagatggaagctaatctttccggaagctcttcgacttcaaggcagaatcagaagatt
gatgttggtgggaggttgatcaagggaatacttcggagaaatgagacgcggcctagccag
gcttcatcttttgtccagcctgaggaaagagtggaacccacagaagcagaaaactccaag
cgtcctcctcggccatccaacactcgagcagggaaagattatcatgtttctggtaccaac
agtgaaaagctagagaggcgtgcaagaaacaaggacagacctgatcgtgttgtgtgggct
cctcgccgggctgatggttccaatatcagcgaggatcaaccgacatcttcagcagcaaac
aatggagaagtggtgaactcctctggtggacacactctcgagaatggttctgctagacat
tctagtcgccgtagtggagctcgcaatagaaaagaagacggctttgccatgactattgag
ggtaaaacaccccggagaggtggtggtggtggtggtgggggtcccagttcacatgagaag
caaaagtggatccaaaaatcatcatccggtacttga
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