Raphanus sativus (radish): 108818191
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Entry
108818191 CDS
T06014
Name
(RefSeq) S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase
KO
K15449
tRNA wybutosine-synthesizing protein 1 [EC:
4.1.3.44
]
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rsz03016
]
108818191
Enzymes [BR:
rsz01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.3 Oxo-acid-lyases
4.1.3.44 tRNA 4-demethylwyosine synthase (AdoMet-dependent)
108818191
Transfer RNA biogenesis [BR:
rsz03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
108818191
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Gene cluster
GFIT
Motif
Pfam:
Flavodoxin_1
Wyosine_form
Radical_SAM
Motif
Other DBs
NCBI-GeneID:
108818191
NCBI-ProteinID:
XP_018446590
UniProt:
A0A6J0KFA2
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Position
7:complement(7889381..7892388)
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AA seq
648 aa
AA seq
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MASSSSIHARLALVALLSATTYYCIHKYRRLKRLKTLSLNPSTTTTSTSRGKIFFISQTG
TSKSLAERLHKLLESNGVAFDLVDPRSYEPEDLPKETVAIFVASTWEGGKPPKDGEFLVD
WLSESAEDFRVGSLLLSGCRFGVFGVGSRAYGEERYNAVAKEMSRRMVGLGGVEMVPVGE
GDVDDGELDREFQEWCDGVIRVLKGGSAREITNEVSQNGVVESDGEEYIDSTDEEEEDDS
NDIVDLEDIAGKAPSRKNGVVKVAKGDGKKEMVTPVIRASLTKQGYKIIGSHSGVKICRW
TKSQLRGRGGCYKHSFYGIESHRCMETTPSLACANKCVFCWRHHTNPVGKSWQWKMDDPK
EIVKGALDLHTKMIKQMKGVPGVTPEKLQEGLTPRHCALSLVGEPIMYPEINALVDELHG
KRISTFLVTNAQFPEKILMMKPITQLYVSVDAATKESLKAIDRPLFADFWERFIDSLKAL
QEKQQRTVYRLTLVKGWNTEELEAYFNLFSIGKPDFIEIKGVTYCGTSATSKLTMENVPW
HTDVKAFSEALSLKSKGEYEVACEHAHSCCVLLGRTDKFKVDGKWFTWIDYEKFHDLVAS
GELFTSRDYMAETPSWAVYGAEEGGFDPEQLRYKKERHHHPKPQAVLA
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgtcgtcctccattcacgctcgactagctctcgtagctctactctcggcgact
acttattactgcatccacaaataccgccgcctgaaacgcctcaaaaccctctccttaaac
cctagcaccaccaccaccagcaccagcagagggaagatcttcttcatctcccaaaccggc
acttccaaatccctagccgaacgcctccacaaactcctggaatcgaacggcgtcgcattc
gatctcgtcgatccgcggagctacgagccggaggatctccccaaggagacagtagccatc
ttcgtcgcgtcgacgtgggagggcgggaagccgcccaaggacggggagtttctcgtcgac
tggctgtcggagagcgcggaggatttccgagtgggatcgcttcttctctccgggtgcagg
ttcggggttttcggcgtggggagccgcgcttacggcgaggagaggtacaacgcggtggcg
aaggagatgtcgaggaggatggtggggctgggtggggtggagatggttcctgtcggagaa
ggtgacgtggacgatggagagttggatagagagtttcaggagtggtgtgatggagtgatt
agagttctgaagggaggctctgctcgagaaataacgaatgaggtttcacaaaacggtgtc
gttgagagcgatggcgaggagtatattgattcgacggatgaagaggaggaagatgatagc
aatgatattgttgatcttgaagatatagctgggaaagctccgtctaggaagaatggtgtg
gtgaaagttgcgaaaggtgatgggaagaaggagatggtgactcctgtgattagagcgagc
ttgacgaaacaggggtataagatcattggttcgcatagtggggttaagatttgtagatgg
actaagtcacagcttagagggaggggaggttgctacaagcactccttttatggcattgag
agtcacaggtgtatggagacaacacctagtttggcttgtgcgaacaaatgtgtcttctgt
tggaggcaccacacaaatccggtggggaagagctggcagtggaagatggacgatcctaaa
gagattgtgaaaggtgctcttgatcttcatacaaagatgattaaacagatgaaaggagtt
ccaggtgtaactccagagaagttacaagaaggtctaacaccaaggcattgtgcgttatca
cttgttggtgaaccaattatgtatccagagatcaacgcccttgtagacgagctacatgga
aagcgtatttccacattcttggttactaatgcgcaattccccgaaaagattttgatgatg
aagcctatcacccagttgtacgtaagcgtagatgctgccaccaaagagagcttgaaggct
attgataggcctctctttgcggacttctgggagcgctttattgactccttgaaagctctc
caggagaaacaacaacgaacagtctaccgtttgacacttgtcaaaggatggaacacagag
gagctagaagcgtatttcaacctattcagcattggcaaacctgatttcatcgagatcaag
ggggtcacatattgtggaacatctgcaacatcgaagttgacaatggagaacgtaccatgg
cacacggatgttaaagcattctcagaagcactgtctctgaagagcaaaggagagtacgag
gtggcttgcgagcacgcccattcttgctgtgttcttctagggagaactgacaagttcaaa
gtggatggaaagtggttcacctggatcgactatgaaaagttccacgatctggtggcttct
ggagaactgtttacaagcagagactatatggcggaaacaccatcatgggcagtttatgga
gcagaggaaggtgggtttgatccagagcagttgcgttacaagaaggaaaggcatcatcac
cctaaaccacaggctgttttagcttaa
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