Raphanus sativus (radish): 108823929
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Entry
108823929 CDS
T06014
Name
(RefSeq) ATP-dependent DNA helicase Q-like 4B
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108823929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsz03032
]
108823929
03400 DNA repair and recombination proteins [BR:
rsz03400
]
108823929
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
108823929
DNA replication proteins [BR:
rsz03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
108823929
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
108823929
Bloom's syndrome complex (BTR)
108823929
FA (Fanconi anemia) pathway
108823929
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-GeneID:
108823929
NCBI-ProteinID:
XP_018452745
UniProt:
A0A6J0KXW1
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All DBs
Position
9:complement(35947752..35956427)
Genome browser
AA seq
1161 aa
AA seq
DB search
MVLVTREDRLAGALPHVQPMIAANKMCGSHLHEAEKSRVHLPQTNWSKHANVFECIPSSN
NFLSSNILYSLESQKPRRNRGTASRPIYNIIPVDVQTLAHQHISKAWCALTNLSINNTYL
RPGITPAIDYINTNCSFSTGGRSTAKVTSNTDGSFYAHNHQEDSQKSIRGTATSFDRFSS
SSPGDGKLTSGKVPWVNNEVRDSVTSCINGIMEVPPIRNFAHPARQVEVIEIDDDDMLES
IDVEKIIMEHYHSTCTHQPSVNIFASRGNEEPCLPPELCSNCSHGVKLGLCLQASSHVEQ
MKDALLAVSNELLDDSTNLSPGHFEQLCQERLLLKKQIQQLEILIQDKERKNSECLASRR
THNIQYETPQTTNHKADYAQAESRAHVKEQGRYVSDNWNMPRDYLCSEDRSGLSSGPIER
ERCVPDIIDITYTDGSNDKKWSSRDFPWTKNLEVNNKRVFGNHSFRPNQREIINATMSGC
DVFVLMPTGGGKSLTYQLPALICAGITLVISPLVSLIQDQIMNLLQANIHAASLSAGMDW
TEQLEILRELSSENSKYRLLYVTPEKVAKSDSLLRHLESLNSHSLLARFVIDEAHCVSQW
GHDFRPDYQGLGVLKKKFPKIPMLALTATATASVKEDVVQALGLVNPVVFRQSFNRPNLW
YSVVPKTNKCLEDIDQFIKKNHFDECGIIYCLSRMDCEKVTETLRKFGHKAAFYHGSMDP
GKRAFVQKKWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYYQECGRAGRDGQ
RSSCVLYYCYSDYIRVKHMVSQGGPGQSTMTTGYNRIASSGRTLESNTDNLLRMVSYCEN
EVDCRRFLQLVHLGENFDSTNCKNTCDNCSSSKTLIDKDVTLIARQLVELVKLTGERFSS
AHIVELYRGSLNQTVKKHRHETLHLHGAGKHLSKSEASRILHHLVTKDILAEYVKKSELY
GSVSSLLKVNRSKADSILSGGQTLNMRFPSAVKVVKPSKNGPTPARVALKQTTLPMAPAP
PQDSVLSDTLFKALKKLRSDIVKESSDAVMSYHIFGNPTLQQISKRLPRTKEELLDIHGL
GKAKVSKYGDRLLETIESTINDHYGTNKNEGTGSGKRRRDENTDPVVVDNDDDDDPDWTP
SQQSKKKAYAVHGQMFGEATC
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggtgttggtaacaagggaagatagacttgctggagctcttccgcatgttcaacctatg
atcgctgctaataaaatgtgtgggagccatctccatgaagctgaaaaatccagagttcac
ttacctcaaacgaattggtcgaaacatgccaacgtttttgagtgtataccgtcctcaaat
aactttctaagctccaatattctttactctctagaaagtcaaaagcctagaagaaataga
ggaacggcttcaaggccaatttacaacatcatccctgtagatgtgcagactttggcgcac
caacatatttcaaaggcttggtgtgctcttacgaatctctcaataaataatacatacctg
agacctggcatcactcctgcaattgattatatcaacactaattgctcattttctacggga
ggaagatccactgctaaagttacatccaacacggatggatctttctatgcacacaatcat
caagaggatagtcaaaagagtataagaggaactgcaacatcttttgaccgtttctcctcc
tcttccccaggtgatggtaaattaacttctggcaaggttccatgggtaaataacgaggtt
agagattcagtaaccagttgtataaatggtattatggaggtaccaccaattagaaacttc
gcacacccagctagacaggtggaagttattgagattgacgatgatgacatgctcgagagt
attgacgtagagaaaattattatggaacactaccattcaacgtgtacccatcaaccatct
gttaatatatttgcttccagaggaaacgaagagccctgcttgcctcctgagttatgttcc
aactgtagtcatggagtaaagctagggctctgtcttcaagcttccagccatgtggaacaa
atgaaggacgcgctgcttgcagtatcaaatgaactacttgacgattctacaaacctgagc
cctggtcattttgaacagctttgccaagagaggttactgttgaaaaagcaaattcagcag
cttgagatccttatccaagataaagaaaggaaaaactctgagtgtttggcatctaggcgt
actcataatattcagtatgagacacctcaaacaacaaatcataaggcggattatgcgcag
gcagaatctcgagctcatgtaaaagaacaaggcagatatgtaagtgataactggaatatg
ccacgagactatttatgttctgaggataggtctggtctttcatctggtcctatagagagg
gaacgatgtgttcctgatattatagatatcacttatactgatggttcaaatgacaaaaag
tggagcagtcgtgactttccttggactaaaaatctggaggttaataacaaaagagtattt
ggaaaccactcgtttcgacctaaccaaagagagatcattaatgcgacaatgagtggttgt
gatgtttttgttttgatgccaacgggaggagggaaaagcttgacatatcagctccccgct
ctgatctgtgcaggaataacattagtcatttctccacttgtttcactcattcaagaccag
ataatgaacttattacaggccaatatacatgccgcttccttaagtgctggaatggattgg
accgaacaactagagatacttcgggagctgagctcagagaattctaaatacaggctactg
tatgtcacaccggaaaaagtggcaaaaagtgattcccttttgaggcaccttgaaagctta
aactcccacagtttgcttgctcgatttgttattgatgaagctcattgtgtgagtcagtgg
gggcatgactttcgaccagattaccagggacttggtgttctgaagaagaagtttcctaaa
attcccatgttggctttgacggctactgcaacagccagcgtaaaagaagatgttgtgcaa
gctcttggcctggttaaccctgttgtgttcaggcaaagttttaatcgcccaaatctgtgg
tactctgtggttcccaagacaaataagtgcttggaagatattgaccagtttatcaagaaa
aaccattttgatgagtgtggcatcatttactgtctttctagaatggactgcgaaaaagtc
actgaaacgttgcggaagtttggacacaaagcagccttctaccatggtagtatggatcct
ggtaaacgtgcgtttgtacagaaaaaatggagcaaagatgaaatcaatataatatgtgct
acggtggcatttggaatgggaataaataagcctgatgttcgctttgtaattcatcactct
ctccctaagtccatagaaggctattatcaggaatgtggtcgtgctggtagggacggccag
aggtcatcatgtgttttgtattactgttatagtgattatattcgagtgaagcatatggtt
agccaaggaggacctggccaaagcaccatgacaacgggatacaatcgtatagccagttca
gggaggacactggaatcgaatacggacaatcttctccgcatggttagttactgtgaaaat
gaggtggactgtcgacgtttcttgcagttagttcatttgggagaaaattttgattcgacg
aactgcaaaaacacatgtgataattgctccagcagcaaaactttgattgacaaagatgta
actttaattgcaaggcaactggttgaactggtgaagctaacaggagaaaggttttcttca
gctcatattgttgaactctacaggggatccttaaaccagacggtcaagaaacacagacat
gagactttgcacctccacggagcaggaaagcatttatctaaaagtgaagcctctcgtatc
ttgcaccatcttgtgacaaaagacattctcgcagagtatgttaaaaagagtgaactgtat
ggatctgtatcgtcgttgctgaaggtgaatagatcaaaggctgactcaatcttatctgga
ggccagactctaaatatgaggtttccttcagctgtaaaagtagtaaagccgagcaaaaac
ggaccaaccccagcaagagttgcactaaagcaaactactcttccaatggcacctgctccc
ccacaagactcggttctctctgacaccttgttcaaagccttgaaaaagcttcgtagtgat
attgtcaaggaatcctcagatgcagtaatgtcataccatatatttggcaatccgacgctt
caacagataagtaaacgacttcccagaaccaaagaggaacttcttgatatccatggtctt
ggaaaagccaaggtgagcaagtacggggatcgtttactggaaactatagaatcaaccatc
aacgaccactacggaaccaataagaatgagggtacggggtcagggaagaggagaagagac
gaaaacactgatccagttgtagtagacaatgatgatgatgatgatcctgattggactcct
agccaacagtcgaagaaaaaggcttacgcagttcacggccaaatgtttggagaagctaca
tgttga
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integrated database retrieval system
