Raphanus sativus (radish): 108827211
Help
Entry
108827211 CDS
T06014
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH15 chloroplastic
KO
K26077
ATP-dependent RNA helicase ISE2 [EC:
5.6.2.6
]
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
108827211
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108827211
Spliceosome [BR:
rsz03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
108827211
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
Helicase_C
IstB_IS21
AAA_22
Nop14
Motif
Other DBs
NCBI-GeneID:
108827211
NCBI-ProteinID:
XP_018456072
UniProt:
A0A6J0L7E6
LinkDB
All DBs
Position
9:complement(2991394..2995818)
Genome browser
AA seq
1171 aa
AA seq
DB search
MNTLPVVSLTPSSSFKFFHFPSSPLLSHSPTFRFTKSLILPPTTHLSFKSLNSLSPSQSQ
LSEDYDEDEDEDDDDDDDDDEAADEYEDITDEARNTDDDDEFPVDSSSPPPAESSRQQQQ
QRVEFRWQRVEKLRSLVRDFGVEMIDIDELVSIYDFRIDKFQRLAIEAFLRGSSVVVSAP
TSSGKTLIAEAAAVATVARGRRLFYTTPLKALSNQKFREFRETFGDDNVGLLTGDSAINK
DAQIVIMTTEILRNMLYQSVGMASSGTGLFHVDAIVLDEVHYLSDISRGTVWEEIVIYCP
KEVQLICLSATVANPDELAGWIGEIHGKTELVTSSRRPVPLTWYFSTKHSLLPLLDEKGI
HVNRKLSLNYLQMSASEARYRDDDDGRRGRRSRKRGGDTSYNSLVNISDYPLSKNEINKI
RRSQVPQISDTLWHLQGKDMLPAIWFIFNRRGCDAAVQYVENFQLLDDCEKGEVELALRK
FRILYPDAVRESAEKGLLRGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINM
PARTAVISSLTKKAGNERIQLGPNELFQMAGRAGRRGIDDKGYTVLVQTAFEGAEECCKL
VFAGVKPLVSQFTASYGMVLNLVAGSKVTRKSNGSEDGKVLQAGRSLEEAKKLVEKSFGN
YVSSNVMVAAKEELAEIDKKIEILTSEISDEAIDKKSRKLLSAKEYKEITALQGELREEK
RKRTELRRRMELERFSALKPLLKGMEDGNLPFLCLEFKDSEGMQQSVPAVYLGHIDSFNG
SKLQKMMSLDESFALNGIEDELSADEPSVKPSYYVALGSDNSWYLFTEKWIRTVYRTGFP
NTALATGDALPREIMKALLDKADMQWDKLSESELGSMWRMEGSLETWSWSLNVPVLSSLS
EEDEVLHMSQEYDNAAEQYREQRSKVSRLKKRISRSAGFREYKKILENAKLTVEKMKRLK
ARSRRLINRLEQIEPSGWKDFMRISNVIHESRALDINTHLIFPLGETAAAIRGENELWLA
MVLRNKVLVDLKPPQLAGVCASLVSEGIKVRPWRDNNYIYEPSDTVIDVVNFLEEQRSSL
IKLQEKHEVEISCCLDVQFSGMVEAWASGLSWKEMMMECAMDEGDLARLLRRTIDLLAQI
PKLPDIDPTLQRSAAAAADIMDRPPISELAG
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgaacactcttcccgtcgtctccctcacaccttcctcctccttcaaattcttccacttc
ccttcttctcctcttctctctcattccccaaccttccgcttcaccaaatccctaatcctc
cctccaacaacacatctctccttcaaatccctcaactctctctcaccctcccagtctcag
ctctccgaggactacgacgaagacgaagacgaggacgacgatgacgacgacgacgacgac
gaagctgcggacgagtatgaagacatcaccgacgaagctcgcaacaccgacgacgacgac
gaattcccggtggattcttcttcgccaccgccggcggaatcctctcggcagcagcagcag
cagcgcgtggagttcaggtggcagagagtggagaagctacgcagcctcgtacgagatttc
ggagtcgagatgatcgatatcgacgagctcgtttccatctacgactttcgaatcgacaag
tttcagagattggctattgaggcgttcctgagaggctcctcggtggtggtttctgctccc
acgagtagtggcaagactttgatagctgaagcagcagctgttgctactgtcgctcgtggt
cgccgcttgttctacaccacgcctcttaaggctctctctaatcaaaagttccgcgagttt
agggagacgtttggtgatgataacgttggtttactcactggtgactctgccatcaacaaa
gatgctcagattgttatcatgactactgagattctccgcaacatgttgtatcaaagtgtt
ggaatggcttcttcaggaactggactttttcatgttgatgcgattgttttggatgaggtt
cattatttaagcgacatatctaggggcactgtgtgggaagagattgttatttattgccca
aaggaggttcaacttatatgtctatcagccactgttgcaaacccagacgaattagctggt
tggattggggagatacatggtaagaccgagttggtgacttcgtcaagacggccagtcccg
ttaacttggtacttctcaacgaagcattctttactacctctgcttgatgagaaggggata
catgtgaatcggaagctgtctctcaattatttgcaaatgtctgcctcggaagctagatat
cgtgatgatgacgacgggcgcaggggaaggaggtcaagaaaacgaggaggtgatacaagc
tacaacagcctcgtcaatatttctgattatcctctttcaaagaatgagataaacaagatc
cgccgttcacaggtgcctcaaatcagtgacacattatggcatctccagggaaaagatatg
ttaccagcgatatggttcattttcaaccgtagaggatgtgacgcagctgtacagtatgtt
gagaatttccagcttttagatgattgcgagaaaggtgaagttgagctggccctgaggaag
tttcgtattctttatccagatgcagtgagagagagcgcagagaaaggactgctaagggga
atcgctgcgcatcatgcgggatgtctacctctttggaaatctttcatcgaggaactgttt
cagcgaggacttgttaaagttgtcttcgccactgagacacttgctgctggcataaacatg
ccggctagaacggctgttatttcgtctctgacaaaaaaggctggcaatgagcgaatacag
ttgggtcctaacgaattgttccagatggctgggcgtgctggacgcagagggattgatgac
aagggttacactgtgctggttcagactgcttttgaaggcgctgaggagtgctgcaaactt
gtgtttgcgggagtaaaacctctcgtgtcacagtttactgcttcgtatggaatggtgtta
aatctcgtagctggttcaaaagtcactcgtaaatcaaatggaagtgaggacgggaaagtc
ttgcaagctgggagaagtctggaagaagccaagaaattagttgagaagagttttggaaac
tatgtgagcagcaatgtgatggttgctgcgaaggaggaacttgctgaaatcgacaagaag
atagagattctgacatcggagataagcgatgaggcgatagataagaagagtaggaagctt
ctgtcagcgaaggaatacaaggagatcactgcacttcagggagagctgcgtgaagagaaa
cgcaagcgtactgaactgcggagaaggatggaactcgagaggttctcagctctaaaaccg
cttctaaaagggatggaagacggaaacttaccgtttttatgtttggagttcaaagattcc
gaagggatgcagcagtcagtccctgcggtttatttggggcatattgattcgtttaacggt
tcgaaacttcagaagatgatgtctctggatgagtcttttgcattgaacggtatcgaggat
gaattatcagctgatgagcctagtgttaaaccatcttactatgtggctcttggctctgat
aactcatggtacctctttactgagaaatggataaggactgtttacaggactggtttccct
aatactgcactagcgacaggagatgctttgcctcgagaaatcatgaaggctcttcttgac
aaagcagatatgcagtgggataaactatccgaatccgaacttggaagcatgtggagaatg
gaaggatctctagagacatggtcctggagtttaaacgtgcctgtcctaagcagcctctcg
gaagaagacgaggtgttgcacatgtcccaagagtatgacaacgctgctgaacagtacagg
gaacaaaggagcaaagtctctcgtctgaagaagaggatatcacgatcagcagggtttaga
gaatacaagaaaattctagagaatgctaagctgacggttgagaagatgaaacggcttaaa
gcgagatcaagacgcctcattaaccgtttagagcagattgaaccttctggttggaaagat
ttcatgcggataagcaatgtgattcacgaaagcagagcgttggacattaacacccacttg
atatttcctctgggtgaaacagctgctgcaatccgcggagagaacgagctctggcttgcg
atggttctccggaacaaagtccttgtcgatctcaagcctcctcagctagctggtgtatgt
gcaagtctagtctccgaaggcattaaagttcgaccgtggagagacaacaactatatatac
gagccgtctgatacagtaatagacgtggttaatttcttagaagaacaaagaagctctctt
ataaagcttcaagagaagcatgaggttgagatttcatgttgtctggacgttcagttctct
ggtatggttgaagcttgggcttctgggttaagttggaaagaaatgatgatggaatgtgca
atggacgaaggtgatcttgctcgtttgctacgacgcaccattgatctcttggctcagatt
cctaagttgcctgatattgaccccacgctgcaacgtagtgcagcagctgcagcagatatc
atggaccgtccaccaatcagcgagcttgccggttga
DBGET
integrated database retrieval system
