Raphanus sativus (radish): 108827966
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Entry
108827966 CDS
T06014
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
108827966
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsz03400
]
108827966
Enzymes [BR:
rsz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
108827966
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
108827966
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
108827966
NCBI-ProteinID:
XP_018456999
UniProt:
A0A6J0LBK3
LinkDB
All DBs
Position
9:7059364..7065894
Genome browser
AA seq
1185 aa
AA seq
DB search
MTEEIKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDAYCKPSDYFSAVRLIIPSLDRERGS
YGLKESVLATCLVDALGISRDAPDAVRLLNWRKGGTAKAGVNAGNFSLIAAEVLQRRQGM
ASGGLSVKELNDLLDRLASSENRGEKTSVLSTLIQKTNAQEMKWVIRIILKDLKLGMSER
SIFQEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRISDVNAAW
KKLHGKDVVAECKFDGDRIQIHKNGTEIHYFSRNFLDHSEYAHAMSDLIVQNIMADKCIL
DGEMLVWDTSLNRFAEFGSNQEIAKAAREGLDSHRQLCYVAFDVLYVGDTSVIHQSLKER
HELLRKVVKPLKGRLEVLVPEGGLNVHRPSGEPSWSIVVHSAADVERFFKETVENRDEGV
VLKDLGSKWEPGDRSGKWLKLKPEYVRAGSDLDVLIIGGYYGSGRHGGEVAQFLVALADR
ADANVYPRRFLSFCRVGTGLSDEELHTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERP
DVWIESPEKSIILSITSDIRTIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELV
NSSNGTTQKQKESENTRENPKAIKTSKRGEKKNVSLVPSQFIQTDVSDIKGKTSIFSNMI
FYFANLPRSHSLDTFTKMVVENGGKFSMNLNNSVTHCIAAESSGIKYQAAKRQRDVIHFS
WVLDCCSRNHLLPLQPKYFLHLTDASRRKLQDEIDEFSDSYFFDLDLEGLKQVLSNAKQS
EDLKSIEHYKKKLCPEKRWSCFIGCCIYFHLYSQTSSTEEEDLLVIMAKRLALEVLMGGG
KVSNNLAHASHFVVLALAEDPLDFTSVSDSFSEKEKRLLLKRRLHVVSSNWLEESLQREQ
KISEEVYTLRPKYMEESDTEESDKSEHDTTEVASGGSAQTEEPASSKLAVTSSRGRSNTR
AGNKRGRSSANSVKRVQRRRGKQPSRIGGGSETEDSDDASEEKASTRLGDIAEDSDDAQR
NSRRRRSAKRGKSRVAQTQRVQRPRRGKKPLKIGGDDSEENDSAEEENKEETGEPDNTVL
AVEEASSQDSRNAKTEMDREEKVQIHEDPVQAMLMDMIPSLSLKNMTGETSKANVCGESE
TSEKRKLDGETDNTCVNAEADEVPPPVKKKKVSYRDVAGELLKDW
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgacggaggagatcaaattcagcgtcctagtgtccctcttcaactggatccagaagagc
aaaacctcatctcagaaacgctccaagttccgcaagttcctcgacgcctactgcaaaccc
tccgactacttctccgccgtccgtctaatcatcccttctctcgaccgagagcgaggcagc
tacggtctcaaggagtcggtgctcgccacgtgtctcgtcgacgccctcgggatctcccgc
gacgctcccgacgcggttcgtcttctcaattggcgaaagggaggaaccgctaaggctgga
gtcaacgccggaaacttctctctgattgctgctgaggtgttgcaacgtaggcaagggatg
gcgtcgggtgggttgagtgttaaggagttgaatgatttgcttgatcgtttggcttcgagt
gagaacagaggggagaagacttctgttctttccactctgattcagaagacgaatgcacag
gagatgaagtgggttattaggatcattcttaaagatttaaaattgggaatgagcgagagg
agcatttttcaggagtttcatcctgatgctgaggacttgtttaatgtcacttgtgacttg
aaactagtctgtgaaaagctgagggatcgccaccaacgtcacaagcgacaggatatagaa
gttggaaaagccgtacgtccccagttagctatgcgtatcagtgacgtgaatgctgcttgg
aagaagctccacgggaaagatgtagttgctgagtgcaaatttgatggggatcgcatacag
atacacaaaaatgggactgagatacattacttctctaggaacttccttgaccattctgaa
tatgcacatgccatgtcggatcttatcgtacaaaatataatggctgacaagtgtatcctt
gatggtgaaatgttggtctgggatacatctcttaaccggtttgctgagtttggttcgaat
caggaaatagcaaaagcagcaagggagggtctcgacagccatagacagttatgttatgtt
gcctttgatgttctttatgttggcgatactagcgtcatccaccagagtttaaaagaacgg
cacgaactcctgaggaaagtggttaagcccttaaaaggccggcttgaagttttagtgcct
gaaggtggtctcaatgttcatcgcccttcaggggaaccaagttggtctattgtggttcat
tctgcagctgatgttgagcgtttcttcaaagaaacagttgaaaatagggatgaaggagtt
gtgcttaaagacctgggatcgaaatgggaacctggagatcgtagtggcaagtggttgaag
ttgaagcctgaatatgtccgggctggttctgatctagatgttcttataataggaggatac
tatggctctggccgtcatggaggagaggtagcacagtttcttgttgcattggctgaccga
gcagacgcaaatgtgtatcccaggcgatttttgtcgttttgtagagttggcacaggactt
tctgatgaagagcttcacactgttgtaagcaaactcaagccttatttcagaaaaaatgaa
cacccaaagaaggctccaccaagcttttatcaggtcacaaatcactcaaaagagagaccg
gatgtttggattgaaagcccggaaaaatcaataatactatcaatcactagtgacatcagg
acaataaggtctgaggtatttgtcgcaccttacagcctgaggtttcctcgtattgataaa
gtaagatacgacaagccttggcatgaatgtctcgatgtgcaagcttttgtggaattggtg
aactcgagtaacggcaccacacagaaacagaaggaatccgaaaacactcgggagaatcca
aaagccattaaaacctccaagagaggagagaaaaagaatgtttctcttgtcccatctcag
tttattcaaactgatgtatcggatatcaagggcaagacctcaatcttctccaatatgata
ttttattttgctaacctgcctcggtcccattctctcgatacattcaccaaaatggtggtt
gagaatggagggaagttctcgatgaacttaaacaattcagtgactcattgcattgcagcg
gaaagcagtggaataaagtatcaagcagcaaaacgtcaaagagatgtcatccacttttca
tgggtcttagattgttgttcacgaaatcatctgcttcctttgcagccaaagtacttcctc
cacctcactgatgcttcaagaagaaagttacaggatgaaattgacgaattttcggattct
tatttctttgatttagaccttgaaggtctcaaacaggtcttgagcaatgccaagcaatcg
gaagacttaaaatccattgaacactacaagaagaagttatgtccggagaaaagatggtcc
tgcttcatcggttgctgcatttattttcacctctatagtcaaacatcgagcactgaagag
gaagacctgttggtaatcatggctaagagattagcgcttgaagtcttaatgggtggtggt
aaagttagcaataatcttgctcatgcgtcacactttgtagtccttgctttagcagaagac
cctttggattttacttcagtttcagatagtttcagcgagaaggagaaacgtcttttgctg
aagagaaggctgcatgttgttagctcgaactggttagaggaaagcttgcaaagagagcaa
aaaataagcgaagaggtgtacactctgaggcctaagtatatggaagagtctgatactgaa
gaatcagataaatctgaacatgatacaactgaagtagcttccggtggtagtgctcaaacc
gaagagccggcttcctcgaaactggcagttactagttcaagaggacggtcaaacactcga
gctggtaataaaaggggaaggtcttctgcaaactcagtgaaacgagtacagagacgcaga
ggcaagcagccttctaggataggcggaggaagtgaaacagaggatagtgatgatgcttcg
gaagaaaaggcttcaacaagactcggtgatatagcagaagattctgatgatgctcaaaga
aactctaggagacgaagatctgcaaagagaggaaagtctcgtgtggcacaaacccaaaga
gtacagagaccaagaagaggcaagaagcctttgaagataggaggagatgactctgaggaa
aatgattctgcggaggaggaaaacaaggaagaaacaggagagcctgacaacacagtatta
gcagttgaagaggcctcctcacaagattctagaaatgccaagaccgagatggatagggaa
gagaaggtacagatccatgaggatccagtacaagctatgttgatggacatgatcccaagc
ctcagtctgaaaaacatgactggcgaaacgagcaaggctaatgtttgtggtgagagtgag
acttcagagaaaagaaaacttgacggcgagactgataatacttgtgtgaacgcagaggca
gatgaagttcctcctcccgtgaagaaaaagaaagttagctaccgcgatgttgccggagaa
ctgctcaaagactggtaa
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