Raphanus sativus (radish): 108828414
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Entry
108828414 CDS
T06014
Name
(RefSeq) ubiquitin domain-containing protein DSK2b
KO
K04523
ubiquilin
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108828414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rsz04131
]
108828414
03051 Proteasome [BR:
rsz03051
]
108828414
Membrane trafficking [BR:
rsz04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Selective cargos
108828414
Proteasome [BR:
rsz03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
108828414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ubiquitin
UBA
Rad60-SLD
STI1-HOP_DP
Mod_r
Dsc3_N
CUE
TBK1_ULD
Rad60-SLD_2
HOIP-UBA
Ubiquitin_5
Motif
Other DBs
NCBI-GeneID:
108828414
NCBI-ProteinID:
XP_018457605
UniProt:
A0A6J0LBQ3
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Position
9:complement(25166221..25169449)
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AA seq
553 aa
AA seq
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MGGEGDSSKPLTASAAVDGGGEGALVAVNVRCSNGSKFSVSTSLDSTVEAFKHLVAQNSD
VPANQQRLIYKGRILKDDHTLLSYGLQADHTVHMVRGFAPSSAPPPPSAPVANAPQDNNT
SNLGESLFPGLGFNPLGGGGNAMSGLFGAGGPDLEQAQQQLAQNPNMIRDMMNTPAIQNL
MNNPEFMRSIIMSNPQMRDLVDRNPELGHVLNDPSILRQTLEAARNPELMREMMRNTDRA
MSNIESMPEGFNHLRRMYENVQEPLMNATTMSGNAGNNAASNPFAALLGNQGVTATQGSD
ASNNSSTPNAETGTGNGIPNANPLPNPWGATAGQTNAPGRTNSGGDARSPGLGGLGGLGG
LGGLGGLGMLGADSPLGATPDASQLSQILQNPAMSQMMQSMLSNPQYVNQLINLNPQLRS
MLDSNPQLREMMQNPDLLRQFSSPEMMQQMMSLQQLLSSQNRNTTSQEPGQTGAAAAGNN
GGMDLLMNLFGSLGAGGLSGTNQPNVPPEERFATQLQQLQEMGFYDRAENIRALLATNGN
VNAAVERLLGSIG
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgggtggagaaggagattcgagtaagccgctgactgcttctgctgctgttgatggtggt
ggcgaaggagctctggtggccgtcaacgtcagatgctcgaacggatccaaattcagtgtg
agcacgagtctcgattcaaccgtggaagccttcaaacacctggtggcgcagaacagcgac
gtccccgcgaatcagcagcgattgatttacaaaggtcgcatcctcaaggacgatcacacg
cttctcagctatggtttgcaggctgatcacacggttcatatggttcgtggctttgcacca
tcttcagcaccaccacctccttctgctcctgttgcaaatgcacctcaagataataacacc
tcaaatcttggagaatctttgttccctgggcttggttttaatccattgggtggtggtggg
aacgccatgtccgggttgtttggagcgggtggtccggatctcgagcaggctcagcaacag
ctagctcaaaaccctaacatgattagagacatgatgaacacaccagccatccagaatctc
atgaacaaccctgagtttatgcggagtattatcatgagcaaccctcagatgcgtgacctc
gttgatcgcaaccctgagcttggccacgtgcttaatgatcccagcatccttaggcagact
ctggaagctgcgaggaacccggagctgatgcgggagatgatgcggaatactgatagggcc
atgagtaatattgagtctatgcctgaggggtttaaccatcttaggcgtatgtatgagaat
gttcaggagccgctcatgaatgctactactatgtctgggaacgctgggaacaatgcggct
tctaatccttttgctgctctccttggaaaccagggggttactgccacacaaggtagcgat
gcttctaataattcttcgacgcctaatgctgaaacggggacaggaaatggtattccgaat
gcgaacccacttcctaacccttggggtgctactgctggccagacaaatgccccaggaagg
acaaattctggtggggatgcgagaagccctggacttggtggtcttggtggcctcggtggt
cttgggggcctcggtggactgggtatgcttggagcggattcacctcttggtgccactcca
gatgcttctcagttgagccagatattgcaaaatccagccatgtcccagatgatgcaaagc
atgctttccaatccacaatacgtaaaccagcttatcaatctcaacccacaactccgaagt
atgcttgattcgaatcctcaattgagggaaatgatgcagaacccagatctccttcgtcaa
tttagctccccggagatgatgcagcaaatgatgagtctacaacaattactttcctcccag
aataggaatacgaccagccaggaaccagggcaaactggtgctgctgccgcaggcaataac
ggagggatggatttattgatgaatctgtttggcagtcttggagctggtggcctgagtggc
acaaaccaacccaatgttcctcctgaggaacgctttgcgactcagttgcaacagctacaa
gagatgggattctatgacagagcggagaacataagggctttgcttgcaaccaatggaaac
gttaacgctgctgtggaacgactgttgggaagtattggctag
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