Raphanus sativus (radish): 108830615
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Entry
108830615 CDS
T06014
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts UPF3
KO
K14328
regulator of nonsense transcripts 3
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03013
Nucleocytoplasmic transport
rsz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108830615
03015 mRNA surveillance pathway
108830615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108830615
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108830615
mRNA cycle factors
P-body specific factors
108830615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
108830615
NCBI-ProteinID:
XP_018459714
UniProt:
A0A6J0LJ84
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Position
5:19396530..19399830
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AA seq
495 aa
AA seq
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MKDPSAKRKVVVRHLPPSLSQSDLLSQIDPRFGDRYNWVSFRPGKSSYKTQKCARAYFGF
KAPEDVYDFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSITKDPCYLE
FVKLLAQPVENLPSAELQLERREAEHSGSSKPAPIVTPLMEFIRQKRATVIGSQGLDVRR
GGRRARAVSANKPASRPSKRNSEKKKYVEKDNSKSVSRKVASDAGSSKQVYNQPNPSGKD
IPVTETASVMDSSLPGIALTMDSGKKKILLLKKDRDSPVNSTPQPEQQMETNLSGSSLTS
RQDQKIVVGGRLIKGILQRNEPRPSQSSSFVQPESRVEPLEAENSKRSPRPANTRAGKDY
QVSGTNSEKQERRPRNKERPDRVVWTPRRSDGSSISEDQLSSSIANNGEVKERMLLQRSG
EVVNSSGGHSLENGSTRHSGRRVGARNRKEEGFAMTGEGKSSRRGGGGGGGGGGGGGGPN
SHEKQMWIQKSSSGT
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacccgtcagcgaagaggaaggtggttgtacgccacttgcctccttctctctct
cagtccgatctcttatcccaaatcgaccctcgtttcggtgatcgttacaattgggtttcc
tttcgccctggaaagtccagctataaaactcagaagtgtgcacgagcctactttggtttc
aaggcacctgaagatgtttacgacttcgctgcttttttcaacggccatgtttttgttaat
gaaaagggtgctcagttcaaggccattgttgaatatgctccttcacagcgtgtgcccaaa
ccatctgacaagaaagatcctcgtgaaggctctattaccaaagacccttgttatcttgaa
ttcgttaagcttcttgctcagcctgttgagaatctccctagtgctgaactccagttggaa
agaagagaagctgagcactctggttcttcaaaaccggctcctattgttacccctcttatg
gaattcattcgtcaaaaacgtgctactgtgattggatcccagggtttagatgttcgcaga
ggtggcagaagagccagggcagtctctgcaaacaagccagcttcaaggccctcaaagcga
aactctgaaaagaaaaagtatgtggaaaaagacaattcaaaaagcgtgtcccggaaggtt
gcatcagacgccggcagttctaagcaagtttacaatcagccaaatccaagtggaaaggac
ataccagttactgaaactgcctctgtcatggatagctctctcccagggattgcattgact
atggattctgggaagaaaaagatcttgctcctgaaaaaggaccgagacagtcctgttaac
tctacaccacaaccagaacagcagatggaaactaatctttctggaagctccttgacttca
agacaggatcagaagattgttgttggtggaaggttgatcaagggaatacttcagagaaat
gagccgcgacctagtcagtcctcatcttttgtgcagccggagtcaagagtggaacctttg
gaagcagaaaactccaagcgttctcctcggccagcaaacactcgagcagggaaagactat
caggtttctggtaccaacagtgagaagcaagagaggcgtccaagaaacaaggagagacct
gatcgtgttgtgtggactcctcgtcgctctgatgggtccagtatcagcgaggatcaactg
tcatcttcaatagcaaacaatggagaagtgaaagaaaggatgttgttgcaaagatctgga
gaagtggtgaactcctctggtggacattctcttgagaatggttctacaagacattctggt
cgccgtgttggagctcgcaatagaaaagaagagggctttgcgatgactggtgagggtaaa
tcatcccggagaggaggtggtggtggtggtggtggtggtggtggtggtggtggtcccaat
tcacatgagaagcaaatgtggatccaaaaatcatcatcgggtacttga
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