Raphanus sativus (radish): 108841484
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Entry
108841484 CDS
T06014
Name
(RefSeq) ubiquitin C-terminal hydrolase 12 isoform X1
KO
K11838
ubiquitin carboxyl-terminal hydrolase 7 [EC:
3.4.19.12
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
108841484
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rsz01002
]
108841484
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rsz04121
]
108841484
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
108841484
Peptidases and inhibitors [BR:
rsz01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
108841484
Ubiquitin system [BR:
rsz04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
108841484
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP7_ICP0_bdg
UCH
USP7_C2
MATH
UCH_1
ubiquitin
SASP
Malt_amylase_C
Motif
Other DBs
NCBI-GeneID:
108841484
NCBI-ProteinID:
XP_018469741
UniProt:
A0A6J0ME00
LinkDB
All DBs
Position
2:complement(25927643..25936460)
Genome browser
AA seq
1115 aa
AA seq
DB search
MTMVTPPPVDQQEDEEMLVPHSDLVDGTAQPMEVSEAETAVSTVENQPAEEPPTLKFTWT
IPHFSRINTRKQYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADAASLPYGWSRYAQF
SLAVVNQVHTRYTIRKETQHQFNARESDWGFTSFMPLSELYDPTRGYLANDTVYIEAEVV
VRKVLDYWSYDSKKETGFVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDAPTA
SIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGT
VVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCKDVYASFDKYVEVERLE
GDNKYHAEGHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDSMVKINDRYEFPLELDLD
REDGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKED
LKRALEEQYGGEEELPQTNPGFNNPPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAE
HLRVRLKKEQEEKEDKRKYKAQAHLFTIIKVARDQDLKEQIGKDIYFDLVDHDKVRSFRI
QKQTPFQQFKEEVAKEFGIPVQCQRFWIWAKRQNHTYRPNRPLTPQEELQPVGQIREASN
KANTAELKLFLEVELLDERPIPPPEKSKEDILLFFKLYDPEKPELRYVGRLMVKSSSKPM
DITGKLNEMAGFAPDEEIELFEEIKFEPGVMCEHLDKKNSFRLCQIEDGDIICFQKPVVN
KEIECRYPAVPSFLEYVQNRQLVRFRALEKPKEDEFVLELSKLHSYDDVVERVAQKLGLD
DPSKLRLTSHNCYSQQPKPQPIKYRGVERLSDMLVHYNQTSDILYYEVLDIPLPELQGLK
TLKVAFHHSTKEEVVIHNIRLPKQSTVGDVINELKTKVELSHPDADLRILEVFYHKIYKI
FPLTERIENINDQYWTLRAEEIPEEEKNIGPNDRLILVYHFAKETGQNQQVQNFGEPFFL
VIHEGETLEEIKNRIQKKLHVSDEDFAKWKFAFMSMGRPEYLQDSDVVYNRFQRRDVYGA
FEQYLGLEHTDTSPKRAYTANQNRHAYEKPVKIYN
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgactatggtgactccgcctcccgttgatcagcaagaggatgaggagatgcttgttccc
cattcagatttggtcgatggtactgctcagcctatggaagtgtccgaagctgagactgct
gtgagtaccgtggagaaccagccagctgaggagcctcccactctgaaattcacgtggact
atcccacacttctctaggattaacacgaggaagcagtactccgatgtgtttgttgttgga
ggttacaaatggcgcatattgattttcccgaaagggaacaatgttgaccatttgtccatg
tacttggatgttgctgatgctgcgagtttgccttacggttggagcagatatgctcagttc
agcctcgctgttgtcaatcaagtccacaccagatacaccattagaaaagaaacgcaacat
caattcaatgcgagagaaagcgattggggatttacgtcattcatgcctcttagcgaactt
tatgatcctactagaggatatttggcgaatgatactgtttacattgaagctgaagtcgtt
gtgcgtaaggttcttgattattggtcttacgactctaaaaaggagaccgggtttgttggt
ctcaagaaccaaggtgcaacttgttacatgaattctcttctgcagacactataccacatt
ccttacttcagaaaggctgtataccacatgccaacaactgagaacgatgcgcccacagca
agtatacctttggctctccaaagtttgttttacaagctccaatataacgacaccagtgtt
gcgacaaaagagctgacaaagtcgtttggttgggacacatatgattctttcatgcaacat
gatgtccaagaactcaatcgagttctctgcgagaaacttgaggacaaaatgaagggaact
gttgtggagggaacaatacaacagctatttgaaggccaccatatgaattatatcgagtgc
ataaatgtagattacaaatctacacggaaagaatcattttatgaccttcagctggatgtt
aaaggctgcaaggatgtttatgcttcttttgacaaatatgttgaagttgaacgccttgaa
ggagacaacaaatatcatgcagaaggacatggattacaggatgcaaaaaagggtgttctt
ttcatagactttccacctgttcttcagctccagctcaaaaggtttgaatatgacttcatg
agggattccatggtgaagataaatgatcggtatgaatttccgctggaactggaccttgat
agagaggatgggaagtatttatcccctgatgctgacaggagtgtccgcaacctgtataca
cttcacagtgtcttagttcatagtggaggagtacatggtgggcattattacgcatttata
aggcccacgctgtcagatcaatggtataaatttgatgatgaacgagtaaccaaggaggat
ttgaaaagggcattggaggagcaatatggtggtgaagaagagctaccacagactaatccc
ggtttcaataaccctcctttcaaattcacaaagtactcgaatgcatatatgcttgtatat
atccgggaaagtgacaaagataaaataatctgcaacgttgatgagaaagacattgctgaa
cacttaagggtgaggctgaagaaggaacaagaagaaaaggaagacaaaagaaaatacaag
gcacaagctcacctctttacgataattaaggttgcaagagatcaagaccttaaggaacaa
attggaaaggatatatattttgatcttgttgatcatgacaaagttcgtagtttccggatc
cagaaacagacaccgtttcaacagtttaaggaggaggtggccaaagaatttggtatacct
gttcagtgtcagaggttctggatctgggcaaagcgacaaaaccatacctatcgtcccaat
cgcccacttacacctcaggaggaattacaaccggttggacaaattagagaggcatctaac
aaggcaaacactgccgaacttaagctgtttttggaagtagagcttctggatgaacgtcct
attcctccgccggaaaaatcaaaagaagatattcttcttttctttaagctttatgacccc
gagaagccagagttaaggtatgttggcagactgatggtgaaaagttccagtaagcctatg
gatataactggaaaactgaatgaaatggctggctttgctcctgatgaagaaatagaactt
tttgaggaaatcaagtttgagcctggtgttatgtgcgaacacctggataagaaaaattca
ttcagattgtgtcaaatcgaagatggagatatcatttgctttcagaaacctgttgttaac
aaggagattgaatgccgctacccagctgtgccttcgtttcttgaatatgtccagaatcga
cagctggtccgatttcgtgctctggaaaaacctaaagaagatgaattcgttctggagttg
tcaaagttgcacagttatgacgatgtggtggaaagagtggctcagaagcttggtcttgac
gatccatccaaacttaggcttacatctcacaattgctattcccagcaacccaagcctcag
cctataaaataccgtggagtagagcgtttgtcagacatgttagtccactacaatcagacg
tcggatattttgtattatgaagttcttgacattcctcttccagaattgcaaggtcttaaa
accttaaaagtcgctttccatcattccacgaaggaagaagtggtaatccacaatatcaga
ctacctaaacaaagcacagtcggagatgttatcaatgaattaaaaacaaaggtggagctc
tcgcatccagatgcagatttgagaatacttgaggtgttctaccacaagatctacaagatt
tttccattaacggaaagaattgagaatataaacgaccaatactggactttgcgagctgaa
gagattccggaagaagagaaaaacattggtccaaatgatcgcttaattcttgtgtaccac
tttgctaaggagactggacagaatcagcaagtgcaaaactttggggagccctttttcttg
gtaatccatgaaggtgaaactcttgaagaaattaagaaccgtatccaaaagaagcttcat
gtatcagatgaggactttgccaagtggaagtttgccttcatgtcaatgggacgtccggag
tatttgcaggactcagatgttgtttacaatcgctttcagagaagagatgtgtatggtgct
tttgagcagtatctcggtttggagcacactgatacttctcctaagagggcttatactgca
aaccagaaccgacacgcttatgagaagccggtgaagatatacaattag
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