Raphanus sativus (radish): 108847562
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Entry
108847562 CDS
T06014
Name
(RefSeq) uncharacterized protein LOC108847562 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108847562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rsz03000
]
108847562
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108847562
04121 Ubiquitin system [BR:
rsz04121
]
108847562
Enzymes [BR:
rsz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108847562
Transcription factors [BR:
rsz03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
108847562
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108847562
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108847562
Ubiquitin system [BR:
rsz04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108847562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
Rtf2
FYVE
Motif
Other DBs
NCBI-GeneID:
108847562
NCBI-ProteinID:
XP_018476333
UniProt:
A0A6J0MX05
LinkDB
All DBs
Position
Unknown
AA seq
1000 aa
AA seq
DB search
MSDQGEKTCPLCAEEMDLTDQQLKPCRCGYQICVWCWHHIVDMAEKDQIEGRCPACRTPY
DKEKIVGMTVDCDSLAFETNMERKKTQKSKSKPSEGRKQLTSVRVIQRNLVYIVGLPLNL
ADEDLLHHKEYFGQYGKVLKVSMSRTSSGAIQQFPNDTCSVYITYAKEEEAVRCIQAVHG
FTLDGKSLKACFGTTKYCHAWLRNAACVNPDCLYLHEVGSQEDSFTKDEAISAHTRSRVQ
QITGATNILHQRSGSMLPPPLDAFCSDSSSAKPIAKVPSSNAASVPRYSPPSGSGSSSRS
TALPAAASWGTHNANQQSLAASVNSNGSSDIQRTTSVNETLAFSAVVANAAHGPVSSSNV
LKRPSNKEENQKVVDKSKLRVLKPLQPNVVVGSGTKRATSPDRDSPSNRLSSSTDSSYDG
RDVDKPSATVNSFDDSDEAVEDDPIVGNLRVGVSQDGCTVGNLAVAVSQIEIATNSRDER
PDIPMAVGSKCDQGSSRQSDHEVSKLSHLEQCKMDSSIKTDKKDIPSESGFPHTRPEWDW
RLDLQSQMQFSSKLDVEDISSLHNQRHHREEDVTNSLFLSNSSSSILDSNHLASRSSLPC
EPSGVNGSNLRFPSDRGSDRLHFPSGFGEKSMFSADHSLFANEGRNKVRSAEDEVISNIL
SLDFDPWDESLTSPQNLAELLGKVDQRASPLKPSNLLKQHNSQSRFSFARYEESSNQAFD
RENHSIYGQFSRDQPIRESVVSRDIYRDNLGNLIGFASNYSGGLLEDVVAASPLFSSHKT
PVTRPQVSAPPGFSAPSRLPPPGFSSHERVGLSSAMLKNTYQVQPPIGNPSGASDIEFAD
PAILAVGRGMINADLDRRSVFSSQMNSYGNETGLQMSRHQSLSAAQQQNGFHHDVRNLSP
SPIDPYGFNSRLMDQQAQGSSLSLFSHGSTRQQPSANQALSNGHWDKWNDGQNLNSLGMA
ELLRNERLGFNGSLYNNGYEDPKFRIPSPGGDVYNRTYGM
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaccaaggagagaagacttgcccactatgtgctgaagagatggatctcactgat
cagcaattgaagccttgcagatgtggctatcagatatgtgtttggtgctggcatcacata
gtggacatggcagagaaagatcagatagaagggcgttgtcctgcttgtcgcactccttat
gacaaagaaaagattgttgggatgactgttgattgcgacagtctggcctttgaaaccaac
atggagcgcaagaagactcaaaagtcgaaatcaaaaccttctgaagggagaaagcaactc
actagtgtcagagtcatccagaggaaccttgtttacattgttgggttgccccttaatcta
gcagatgaagatctactccatcataaagaatatttcggtcagtatggaaaagttctaaag
gtttccatgtcccgaacgtcatctggtgccatccaacaattccctaacgatacatgcagt
gtatacattacttatgcaaaagaggaagaggctgtccgttgcatccaggccgttcatggg
tttaccttggatggtaaatcactgaaggcgtgttttgggacaaccaagtattgtcatgca
tggctgagaaatgcggcttgtgttaatcctgattgtctctatctgcacgaggttggttct
caagaggatagtttcacaaaagatgaggccatatctgcccatacaaggagtagagttcag
caaatcaccggagcaacaaacatacttcatcaacgttcagggagcatgctacctccacca
ctagatgctttttgcagtgacagttcttctgctaaaccaattgcaaaagttccttcaagt
aatgcagcaagtgttcccaggtattctccacctagtgggagtgggagctctagcagatcc
actgctcttcccgctgcagcgtcatgggggacacataatgcaaaccagcagtctttagca
gcgtcggttaactcaaatggatcttctgatatacaaagaacaacatcagtaaatgaaacc
ttggccttctctgctgttgttgcaaatgcagctcatggacctgtgtcctctagtaacgtt
cttaaaagaccatccaacaaagaagaaaatcaaaaagttgttgacaaaagcaagcttagg
gttttgaagcctttgcagcctaatgttgtggttggttctgggaccaagagagccacctca
cctgatagagattctcctagcaatcggttatccagttcaacagactcttcctacgatggc
agagacgttgacaagccttccgctactgtgaactcgtttgacgattcagatgaagctgta
gaagatgaccctattgtaggtaacttgcgtgttggtgtttcacaagatggctgtactgta
ggaaacttggctgttgctgtttcacaaatagagatagccacgaattcgagagatgagcgt
cctgatattccaatggcagttggtagcaagtgtgatcaaggttctagtagacaatctgat
catgaagtatcaaagttgtcacatctagagcagtgtaagatggatagctctataaagact
gataaaaaagatataccatcagagagtgggttccctcatacaaggccagagtgggattgg
agattagatttgcaatcccaaatgcaattcagctcaaaattggatgtggaggatatctca
tcattacataaccaaaggcatcaccgtgaagaggatgttaccaactcgctgtttttgtct
aactcttcaagttccattttggattcaaatcatctggcttctcgttcttccctaccttgt
gaaccttcaggtgtaaacggttcaaacttgagattcccttcggatagaggcagcgatagg
ttgcattttccaagtgggtttggtgagaaatccatgttcagtgcggatcactctctgttt
gctaatgaaggcaggaacaaagttcgcagcgcagaggatgaagtaatctcaaacattttg
tcactggactttgatccttgggatgaatccttaacctcaccccagaatttggctgagtta
ctaggtaaagttgatcagcgagccagtcctctaaaaccttcaaacctcctgaagcaacat
aacagtcagtccagattctcttttgcacggtacgaagaatctagtaatcaagcatttgac
agagagaaccatagcatttatgggcagttttcaagagatcagcctattcgagagtctgta
gtgagccgagatatctatcgtgataatctcgggaatctaattggatttgcttcaaactat
tccggtggattattggaagacgttgttgctgctagtcctttattctcatcgcacaagact
cctgttacacgaccccaagtttctgctcctccaggattttctgcgcccagcaggttacct
cctcctggcttctcttcacatgaaagagttggcctatcttctgccatgctaaagaataca
tatcaagtacagcctccaattgggaatccaagtggtgcaagtgatatagagtttgcggat
cctgctattctagctgttggaagagggatgataaatgcagacttggataggagatcagtt
ttctcatcacaaatgaattcttatgggaatgagacaggactccaaatgtcaagacatcag
tctctgtctgctgcacaacaacaaaatgggtttcatcatgatgtcagaaacttgtctcct
tcgcctatcgatccttacggatttaactcaaggctaatggatcaacaggcacagggaagt
agcttatctcttttctcacatggatcaacaagacaacaaccatctgcaaatcaagccttg
tccaatggtcactgggataagtggaatgatggccaaaatttgaactctctaggcatggcc
gagctacttaggaatgaacggctgggattcaatgggagcctatacaacaacggatatgaa
gatccgaaatttcgtattccaagtcccggtggggatgtgtataatagaacatatgggatg
taa
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