Raphanus sativus (radish): 108861936
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Entry
108861936 CDS
T06014
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108861936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
108861936
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108861936
Spliceosome [BR:
rsz03041
]
Complex A
U2 snRNP components
U2 related factors
108861936
Complex B
108861936
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
108861936
NCBI-ProteinID:
XP_018491446
UniProt:
A0A6J0P4F6
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All DBs
Position
1:9158494..9163291
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AA seq
1175 aa
AA seq
DB search
MEVVKSKYREEDLEVEEEEDDLKSSRRDRDRSRERKKERGSDKRREKDRRKRRSERVKSS
DESEDEYYDRGGDDDDEERERPKEKERRRRDKEKGKRRSERRRSSDSEDEDEEDGERDKR
RVKEKERGHREHREKDRKRDREREERKEKEREREKDRVRREREREEREKERLKERERRER
EREDGERDRKEREKERGRRHRERGRSREDGNEESDDDVKRDLKRRRRESGERKEKEREKS
VGRSSRHGDDNVDSPRKKSVEEDGEKKEKKTREEELEEEQKKLDEEAEKRRRRVQEWQEL
KRKKEEAESESKGDADDKEPKTGKAWTLDGESDDEEGHPEEKPETEMDVDGETKPETGAD
AKMVDAEENEIVTTVSEVEGEGAADEEEIDPLDAFMNSMVLPEVEKLSSSTPPAVEDSSL
VTKSNGKKIDHQPKKGFNKSLGRIMQGEDSDSDYSEPKNDDDPSLDEDDEEFMKRVKKTK
AEKLALVDHSKIEYEPFRKNFYIEVKEISRMTPEEVNAYRKEFELKVHGKDVPRPIKSWH
QTGLTSKILDTMNKLKYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIK
DQPPVEAGEGPIGLVMAPTRELVQQIHSDIKKFSKPLGIRCVPVYGGSGVAQQISELKRG
TEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPDRQ
TVLFSATFPRQVEALARKVLNKPIEIQVGGRSVVNKDISQLVEVRPESERFLRLLELLGE
WYEKGKILVFVQSQEKCDALLKDLFKRSYPCLSLHGGKEQSDRESTISDFKSNVCNILIA
TSVAARGLDVKDLELVVNYDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLV
KALELSEQPIPDDLKAIADGFMAKVRQGTEQAHGTGYGGSGFKFNEEEEEVRKAAKKAQA
KEYGFEEDKSDSEDENDVVRKAGAVGGDTSQHQAALAHIAAIAAAAKANAAAMNAPVTSN
QLLPNGGGITSLPGTLPVSIPVLPNDGAGRAAAMVAAINLQHNLAKIQADAMPEHYEAEL
EINDFPQNARWKVTHKETLGPISDWTGAAITTRGQYYPPPRIPPPGERKLYLFIEGPTEK
SVKTAKVELKRVLEDITNQSLSLPGGSQAGKYSVI
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcgttaaatctaagtacagggaggaggatttggaggtggaggaggaggaggat
gatttgaagagcagtcggagggaccgtgatcggagtagggagaggaagaaggagaggggt
tcggataagcgccgggagaaggatagacgcaagaggcggtctgagagagttaagagtagt
gatgaatctgaagatgagtactacgatagaggtggtgatgatgatgatgaagagagggag
aggcctaaagagaaggagaggaggcggagggataaagagaaggggaagagacggtcagag
agaaggaggagtagtgattctgaggatgaggatgaagaagatggtgagagggataaacgc
cgggtgaaggagaaggagagaggacacagagaacatagggagaaagatcggaaaagggat
agagagagggaagagagaaaggagaaagaaagagagagggagaaggatagagttaggagg
gaacgggaacgagaggagcgtgagaaggagagactgaaagaaagagagaggcgcgagcgg
gaacgggaagatggagagagggataggaaagaacgtgagaaagaaaggggtaggaggcac
cgagaaagggggagatcaagggaggatgggaatgaggagagtgatgatgatgtcaagcgt
gacctgaaacgtaggagaagagagagtggagaacggaaggagaaggagcgtgagaagagt
gttggtagatctagcaggcatggagatgacaatgtggatagtccaaggaaaaagagtgtc
gaggaggatggtgaaaagaaagagaaaaagaccagggaagaagaactagaggaagagcag
aagaaattggatgaggaggctgagaaacggaggagaagagttcaggagtggcaagagttg
aagaggaagaaagaggaagctgaaagtgaaagtaagggtgatgcggatgataaagagcct
aagaccggtaaggcttggactcttgatggggaatctgatgatgaagaagggcatccggag
gaaaaaccagaaacagagatggatgttgatggagagactaaacccgaaactggtgcagat
gccaagatggtagacgcggaggagaacgagatagttactaccgtctctgaagtagaaggt
gaaggagctgcagatgaagaggaaattgatcctttagatgcttttatgaattcgatggta
ttacccgaggttgagaagcttagcagcagtactcctccagcagttgaagatagtagtttg
gttactaagagtaatggaaagaaaattgatcaccagccgaagaaaggttttaacaaatcc
cttggcaggataatgcaaggtgaagattctgattctgattattcagaaccaaagaatgat
gatgatccaagtttagacgaagacgatgaggagttcatgaagagagtaaagaagacaaaa
gcagaaaaattggctcttgttgaccactcaaaaatagagtatgaacctttccggaagaac
ttctatattgaagtgaaggagatctcaaggatgacaccagaagaagttaacgcttacaga
aaggaatttgagctgaaagtccatggaaaggatgtaccaagacccataaaatcttggcac
cagactggactaaccagcaaaattttggataccatgaacaagcttaagtatgaaaagcca
atgcctatccaaacgcaagcacttccaatcatcatgagcggtcgagattgcattggagtt
gcaaaaaccggatcaggtaaaacgctaggttttgttttgcctatgttgaggcatatcaag
gatcagcctcccgttgaagctggtgaggggccaattgggcttgtaatggcacctactagg
gagcttgttcagcagattcacagcgacatcaaaaagttttcaaagccattgggtataaga
tgtgttcctgtgtatggaggatcaggagttgcgcagcaaattagtgagctgaagcgaggg
acagagattgttgtgtgcactcctgggaggatgattgatattctttgcacaagcagtggg
aaaatcaccaatctgcggagagtcacatttttggtaatggatgaagctgatcgtatgttt
gacatggggtttgagcctcaaattactcgtattattcaaaatattcgacctgatcggcag
actgtgctcttttctgctacttttccacgtcaagttgaagctttggcacgtaaagtcttg
aacaaacctattgaaatacaggttggtggaaggagcgttgtgaataaggatatatcacag
ttagttgaagtcagaccggagagtgagaggttcttaagactgctggaacttcttggagaa
tggtatgagaaaggaaagattttggtttttgtgcagtcgcaggaaaaatgtgatgccttg
ttgaaggatttgtttaaaaggagttatccttgtctatctcttcacggtggtaaagaacag
tctgatcgtgaatcaactatatctgattttaagagcaatgtgtgcaatattttgattgcc
acaagtgttgcagctaggggtctagatgtgaaagaccttgagttggttgtaaactatgat
gctccgaaccactatgaagattatgtgcatcgcgttggcaggacaggaagggcagggcgg
aaaggctgtgctgtgacatttatctccgaagatgatgcaaaatatgcaccggatttagtc
aaggccctggaactttccgagcagccaatccccgatgatctgaaagcaatcgctgacggt
ttcatggcgaaggtgagacagggtactgagcaagctcatggaactggctatggaggtagt
ggctttaaattcaacgaagaggaggaagaagttaggaaagcagcaaagaaagcacaagcg
aaggagtatgggtttgaggaagacaagtctgactcagaagatgagaatgatgtagtaaga
aaggcaggtgctgtcggtggtgatacctctcaacaccaagctgctcttgctcacatagcc
gccattgctgcggctgctaaagctaatgctgctgcaatgaatgctcctgtgacttcaaac
cagttgctgccaaatggtggcgggattacctctctacctggtacccttccggtttctatt
ccagtccttcctaatgatggggcaggccgtgctgcagccatggttgctgccattaacctg
caacataacctggcgaagattcaagctgatgcaatgcctgaacactatgaagcagaactg
gagatcaatgattttccacaaaatgctcgttggaaggtcacccacaaagaaactttgggt
ccaatatcggactggactggagccgccattaccactagaggtcagtattatcctcctcca
cgtatcccaccacctggggaacgcaagctctacttgttcattgaagggcctacggaaaaa
tctgtgaagacggcgaaagttgaactcaagcgtgttcttgaagacattacaaatcagtcg
ttgtcacttcctgggggatcgcaggctggaaagtactccgtcatataa
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