Raphanus sativus (radish): 108863610
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Entry
108863610 CDS
T06014
Name
(RefSeq) pre-mRNA-processing protein 40B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108863610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
108863610
Spliceosome [BR:
rsz03041
]
Complex A
U1 snRNP components
U1 related factors
108863610
Complex B
108863610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
Motif
Other DBs
NCBI-GeneID:
108863610
NCBI-ProteinID:
XP_018493598
UniProt:
A0A6J0PC16
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Position
5:complement(8336721..8344993)
Genome browser
AA seq
1030 aa
AA seq
DB search
MANNPHYPGIQPFQHPNASSIDLPRGFAPSMNFQLRPTIQAPHSEQGARLASQNFQCVGR
GGPAMNIGFPPQSYAPQLLQSMHHSLERPSQSNQVQHVPLGHPSLVLQPNVSIASGTFLP
EPYVQTSDINMNGGPRALFSYQSATSFEHLRAPTQVTGPSSHSQSQAQQRAPISQANAPS
SIMNPTFENPKVDFSQPIPSQEAVTDWVEHTSADGKRYFFNKKTKQSTWEKPVELMTLFE
RADAKTDWKEHSSPDGRKYFYNKVTKQSTWTMPEEMKIAREQAEKSSVQGLHAEDVVDTS
KMLSCSDTAREQAEKSSVQGLHAEDVVDTSKMLSCSDTALTAALTGLPSQTPSILPTSNT
SEKLAPPSDWEQAASIPGSSSPVENVDHVQAIADKTSELCDTAKTDNSSATVMITSTATL
VEKESVSTENSGNADVVSAKSTDQGNGTGRKESQNHVVDSEIVDSQSEGKQIHQENLSYT
NKSEAVDVFKSLLKSANIGSDSTWEQAMREIINDRRYGVLRTLGERKQAFNEFLAQKRKT
AEEEKIARQIKRYENFKTMLEECVELTPSTRWSKAVSMLEDDERFKVVEREKDRRNIFDD
HISDLKEKERVKASEDRKRNITEYRKFLESCNFIKPNSQWRKVQDRLEVDERCSRLEKID
QLQIFQEYLRDLEREEEERKKIQKEEIKKAERKHRDEFRGLIDEHIATGDLTAKTSWRDY
LMKVKDLPVYLAIASNSTGATPKDLFEDAVEDLKRKYHELKSQIKDVLKVRKVTLSAGST
FDEFKVSVSEGIGFPSIPDVKLKLVFDDLLERAKEKEEKEARKQTRNTEKLVDMLRSFKY
ITASSSWEDSKHLVEVICLLVVCSSIGDESFRKKTFEDYLSHLKEQAKRIKQNKKEHVRE
EHYKGNDKYGREKDRVRERDIRDHRKQGSADNHNHNVDELRGKEGRRSGRDSHSRHGERH
TSVKEIETDHYKESHKAGGGHKKSRQERGLVLEAEDEGREKRRRKEGESEQHTKGAEKEE
ELEDGECGRY
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggctaataacccacactatcctggcattcagccattccagcatccgaatgccagctcc
atagatctgcctcgaggctttgctccatccatgaattttcagcttcgtcctaccattcaa
gctccgcattctgagcaaggtgctcgtttggcttctcaaaattttcagtgtgttgggaga
ggtggcccagcgatgaacattggatttccacctcaatcttatgcgcctcagttactacag
tcaatgcaccattcgctcgaaagacctagccaatcaaatcaggtgcaacatgtgccacta
ggacatccgtctctagttttacagccaaatgtgtcgattgcttctggtaccttcttgccg
gagccttacgtacaaacttcagatattaatatgaatggtggacctagggcactcttttct
tatcagagtgcaacttctttcgagcatctgagggcaccaactcaagtcactggaccaagc
agtcacagtcagagtcaagcacaacaaagagcacctatcagccaggccaatgcaccatct
tctataatgaatccaacatttgaaaatccaaaggtagatttttctcaacctataccttct
caagaggctgtaacagactgggttgagcatacctcggcggatggaaagagatattttttc
aacaagaaaacgaagcagtccacttgggagaagcctgttgagttgatgactctatttgag
agagctgatgcaaaaactgactggaaagaacattcaagtcctgatggaagaaagtatttt
tataataaggttaccaagcaatcaacatggacaatgcctgaggagatgaagattgcccgt
gaacaagcagaaaaatcatctgttcaggggcttcatgcagaagacgtggttgatacttct
aagatgctttcttgttctgatacagcacgtgaacaagcagaaaaatcatctgttcaaggg
cttcatgcagaagacgtggttgatacttctaagatgctttcttgttctgatacagcattg
actgcagctctgactggtttaccaagccaaacaccatctatacttcccacatctaatacc
agtgagaaactagctcctccatctgattgggagcaggcagcttcaattcctggaagctct
tctccggtcgaaaatgttgatcacgttcaggcaatcgcagataaaacatcagaattgtgt
gatactgcaaaaactgataattcttctgccactgtgatgataacttctactgctacattg
gttgagaaggaatcagtatcaactgagaacagtggaaatgcagatgtcgtgtcagctaaa
agcacagatcaaggtaatgggactggacgaaaagaaagccaaaatcatgttgtggatagt
gaaatagttgacagtcagtcggaaggaaaacaaattcatcaagagaatctttcttatacc
aacaaatcggaagctgtagatgtcttcaaatcacttttgaaatctgccaatattggatct
gactcgacatgggaacaggccatgagagaaataattaatgatagaagatacggggttctg
aggactcttggagagcggaagcaagccttcaatgagttcctagctcaaaagagaaaaaca
gcagaggaggaaaagatagccagacagattaaacgatatgaaaattttaaaacgatgtta
gaggaatgcgtggagcttactccttctactcggtggagcaaggctgtgtctatgttggaa
gacgatgagcgtttcaaagttgttgaacgagaaaaagaccgtcgtaatatttttgacgat
catatcagtgacctaaaggagaaggagcgggtaaaagcttctgaggatcgcaagcggaac
ataactgaatacaggaagtttttggaatcttgtaatttcatcaagcctaatagccaatgg
cgcaaagttcaggaccgcctagaagtggatgaaagatgttcacgtcttgagaaaattgat
cagttacaaatctttcaggagtatctgcgcgatctggaaagagaagaagaggagagaaag
aagatacaaaaggaggaaattaaaaaagcagagcgaaagcatcgtgatgagttccgtggg
ctgatagatgaacatattgcaacaggagatcttactgccaaaactagttggcgtgattat
ttaatgaaggtcaaagatttacctgtatatttagcaatcgcatcgaactccactggagct
actccaaaagacttatttgaagatgctgttgaggatttgaaaagaaagtaccatgagctc
aaatctcagataaaggacgtattgaaggtgagaaaggtaacgttatccgctggatcgacg
tttgatgagttcaaagtctcagtttctgagggtatcggtttcccatctattcctgacgtc
aaactaaagttagtttttgatgatttgctggaaagggcaaaggagaaggaagagaaggaa
gctagaaaacagactcggaatactgagaaattggtggatatgcttcgctccttcaagtat
ataactgcctcttcatcctgggaggattctaagcatcttgttgaagttatatgtttactt
gttgtatgtagttctataggagacgagagcttccggaagaagacattcgaggattacctt
tcgcacctcaaagagcaagcaaaaaggatcaaacagaacaagaaggaacatgttagagag
gaacattacaaggggaatgataagtacggaagagagaaggacagagtgcgagaaagagac
attagagatcatcgtaagcaaggttcagctgataatcacaaccataatgtggacgaactc
cgtggaaaagaaggtagaagatcaggaagagatagccacagtagacatggagaaagacat
actagcgtgaaggaaattgagacggaccattacaaagaatctcataaagctggtggtggc
cataagaaatcaagacaagagcgaggtttggtgctagaagcagaggatgaaggcagggaa
aagaggcgtagaaaagagggagagagcgagcaacatacaaagggtgcggaaaaggaagag
gagcttgaagatggagaatgtggtaggtattaa
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