Ramlibacter tataouinensis: Rta_07780
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Entry
Rta_07780 CDS
T01544
Name
(GenBank) ATP-dependent DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rta
Ramlibacter tataouinensis
Pathway
rta03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Rta_07780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rta03400
]
Rta_07780
Enzymes [BR:
rta01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Rta_07780
DNA repair and recombination proteins [BR:
rta03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Rta_07780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
GDP_Man_Dehyd
Motif
Other DBs
NCBI-ProteinID:
AEG91859
UniProt:
F5XXQ6
LinkDB
All DBs
Position
complement(806427..808886)
Genome browser
AA seq
819 aa
AA seq
DB search
MVQKHWATRLHYDFRLELEGTMKSWAVPKGPSFDPADKRMAMPTEDHPIAYNRFEGTIPP
GNYGAGKVIIWDKGTWVPLEDPHRGWREGKLKFELRGHKLRGHWTLVRMKGRGNGREDPW
LLIKERDELARPAAEFSVVDEMPDSVGHLPDVPEGAASSPAPSSSSAPAADAAVPASVAP
QAAVGGPPAGARPAALPQEMQPQLATLVEGPPEDPQNWIYEIKFDGYRMLARAEGGAVRL
VTRNGNDWTHRLPHLERALVAMELPDGWYDGEIIVPGNGTPADFQSLQGAFESSRTADIV
YHLFDLPYCAGHDLRDVPLEQRRAVLQRVVERRPQPGVRFSAVFDAPPEDIVASACRLGL
EGVIGKRRDSRYVTRRSADWIKLKCARRQEFVIGGFTDPKGSRTGIGSLLLGVHGAQGEL
KYAGNVGTGFNEQSLRQLRERLDALATDTKPFASGAQIPKKAHWVRPELIAEVSFGEWTR
DGRVRHSVFRGLRGDKAPQAITREEAMPAPAAEPAPAPATASVALPAKLRVSHPERVIDA
ASGTTKIQLVRYYALVAPLMMPHLKNRPVSLVRAPQGIGGELFFQKHAERYQMAGIEALD
PALDPDHPPVLEVVRPEGLLSAAQMNVIEFHTWNGVKTAIAKPDRMTFDLDPGEGVQWPQ
VQEAAQLVRAFLGELGLPAFLKTSGGKGLHVVVPLKKQRDWDTVKDFSQAIVQHLARTLP
DRFVAKSGPSNRVGKIFIDYLRNGYGATTVAAWSARSRPGLGISVPVRWEELGALGSGAH
WTVATVHTRLDEGNAPWSDYEAQRAGLSRAMKTLGFQRP
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
gtggtccagaagcactgggccacgcggctgcactacgacttccggctggagctggaaggc
accatgaagagctgggccgtgcccaagggccccagcttcgacccggccgacaagcgcatg
gcgatgccgaccgaggaccaccctatcgcctacaaccgcttcgagggcaccatcccgccg
ggcaactatggcgcgggcaaggtcatcatctgggacaagggcacctgggtgccgctggaa
gacccgcaccggggctggcgcgaaggcaagctgaagttcgagctgcgcgggcacaagctg
cgcggccactggacgctggtgcgcatgaagggccgcggcaatggccgcgaggacccctgg
ctgctgatcaaggaacgcgacgagctggcccggccggcggccgagttcagcgtggtcgac
gagatgccggacagcgtgggccacctgcccgacgtgccggagggcgcggcatcctccccg
gcaccgtcctccagctcggcccctgctgcggatgccgcggtgcccgcgtccgtggcgccg
caggcagccgtcggcggaccgcccgccggcgcgcgtcccgcggcgctgccgcaggagatg
cagccgcagctggcgaccctggtcgaggggccgccggaggatccgcagaactggatctac
gagatcaagttcgacggctaccgcatgctcgcgcgcgccgagggcggcgcggtgcgcctc
gtcacccgcaacggcaacgactggacgcaccggctgccgcacctggagcgggccctggtc
gcgatggagctgcccgacggctggtacgacggcgagatcatcgtgccgggcaacggcacc
cccgccgacttccagtcgctgcagggcgccttcgagagctcgcgcacggccgacatcgtc
taccacctgttcgaccttccctattgcgccgggcacgacctgcgcgacgtgccgctggag
cagcgtcgcgcggtgctgcagcgggtggtggaacgccgcccgcagccgggcgtgcgcttt
tccgccgtgttcgacgcgccgcccgaggacatcgtggcctcggcctgccgcctggggctg
gagggcgtgatcggcaagcggcgcgattcccgctacgtcacgcggcgctcggccgactgg
atcaagctcaagtgcgcgcggcgccaggaattcgtcattggcggcttcaccgaccccaag
ggctcgcgcaccggcataggctcgctgctgctgggcgtgcacggtgcccagggcgagctg
aagtacgccggcaacgtgggcaccggcttcaacgagcagagcctgcggcagctgcgcgag
cggctggacgcgctggccaccgacaccaagccgttcgcgtccggcgcgcagatcccgaag
aaggcgcactgggtgcggccggagctgatcgccgaggtgtccttcggcgaatggacgcgc
gacgggcgggtgcggcattcggtgttccgcggcctgcgcggcgacaaggcgccgcaggcg
atcacgcgcgaggaggcgatgccggcacccgcagcggaaccggcacccgcaccggcaacg
gcatccgtcgccctgcccgccaagctgcgcgtcagccacccggagcgggtgatcgacgcc
gccagcggcaccaccaagatccagctggtgcgctactacgccctggtggcgccgctgatg
atgccgcacctgaagaaccggccggtgtctctggtgcgcgcgccccagggcatcggcggc
gagctgttcttccagaagcacgcggagcgctaccagatggcgggcatcgaggcgctggac
ccggccctcgatcccgaccacccgcccgtgctggaagtggtgcggcccgagggcctgctg
tcggcggcgcagatgaacgtcatcgagttccacacctggaacggcgtgaagaccgccatc
gccaagcccgaccgcatgaccttcgacctggacccgggcgaaggcgtgcaatggccgcag
gtgcaggaggcggcgcagctggtgcgcgccttcctcggcgagctggggctgccggccttc
ctcaagaccagcggcggcaaggggctgcacgtggtggtgccgctgaagaagcagcgcgac
tgggacacggtgaaggatttctcgcaggccatcgtgcagcacctggcccgcaccctgccc
gaccgcttcgtcgccaagagcgggcccagcaaccgggtcggcaagatcttcatcgactac
ctgcgcaacggctacggcgccaccacggtggccgcctggtcggcccgctcccggcccggc
ctgggcatctcggtgccggtgcgctgggaggagctgggcgccttgggcagcggcgcgcac
tggaccgtggccacggtgcacacccggctggatgagggcaacgcgccctggtccgactac
gaggcgcagcgcgccggcctgtcgcgcgccatgaagacgctcggcttccagagaccctga
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