Rickettsia typhi B9991CWPP: RTB9991CWPP_00635
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Entry
RTB9991CWPP_00635 CDS
T01810
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rtb
Rickettsia typhi B9991CWPP
Pathway
rtb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rtb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RTB9991CWPP_00635 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtb03021
]
RTB9991CWPP_00635 (rpoB)
03400 DNA repair and recombination proteins [BR:
rtb03400
]
RTB9991CWPP_00635 (rpoB)
Enzymes [BR:
rtb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RTB9991CWPP_00635 (rpoB)
Transcription machinery [BR:
rtb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RTB9991CWPP_00635 (rpoB)
DNA repair and recombination proteins [BR:
rtb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RTB9991CWPP_00635 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
AFE54832
LinkDB
All DBs
Position
161657..165781
Genome browser
AA seq
1374 aa
AA seq
DB search
MVSLRDNIESQPLSHNRRVRKNFGHINLVADIPNLIEIQKNSYERNFLQLNIKDSERKNK
GLQSILNSIFPISDSSNIANLEFVKYEFDTPKYDVDECSQRSLSYAAPLKVTLRLSIWDI
DEDTGTREIKGIKEQEVYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVH
SSGKLLYSARVIPYRGSWLDFEFDAKDVIYFRIDRKRKLYATTLLRAIGMNTEEIMKFYY
NSVTYKCIKNKGWSVKFIPQHITAHRLTSDLVDADTGNVLLKAGQKITPRLAQKYFSIGL
NNILVTHETLIGKYLSEDLRDPESDEILAKIGEMITADMLQVINDLKIKNVNVLVINPQS
GPYIRNTLFADKNQDRETALCDIFRVLRPGEPANIEAAESLFYNLFFDAERYDLSEVGRI
KMNSRLELNISEEITVLTIDDIKNIVRILVELKDGKGIIDDIDHLGNRRVRSVGELIENQ
FRIGLVRIEKSVIERMSAGDVDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSE
ITHKRRLSALGPGGLSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINK
HGFIESPYRRVKDGYVTDEVVYLSAIEEGKYKIGQANSKVDQDGKLQGEFINCRVEGGNF
VMVEPYEVDFIDVTPMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTEAPFVGT
GVEGVVAKDSGASVLALHDGIVERVDSNRIVIRTLEQKVDGSPSVDIYNLLKFQKSNHNT
CINQKPLVKVGHYVKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIV
KEDVFTSIHIEEFEVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYVGAEVKAGDIL
VGKVTPKSESPITPEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRIFSRRGVEKDQ
RAIAIEKQQIEKLAKDRDDELEIIEHFVFSWLEKLLVGHVIISGPKQITAGQTITTEMLK
GLSKGQLWQLIVEDANVMNEIEQIKIHYDEKKHALDKRFATKVEKLQSGDDLPQGALKVV
KVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIG
QILETHLGWASINLAKKISTLVKEYKDNNIDIEQIKKFLLELYGKDINYILEGSEEGIIS
FCNKVSKGVYFATPVFDGAKVQDVKDMLKLADQDLSGQVKLIDGRTGEYFDRLVTVGHKY
LLKLHHLVDNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEML
TVKSDDVNGRIKTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLEVTASK
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atggtttcattaagggataatatagaatcacaacccttgtcacataatagaagagtaaga
aagaattttggtcacataaatttagtagcagatataccgaatttgattgaaattcaaaaa
aattcatatgagagaaactttttacagttaaatattaaagattctgaaagaaaaaacaaa
ggtttacaatcgatattaaactcaatttttcctatttcagattcctcaaatattgcaaat
ttagaatttgtaaaatatgaatttgatactccaaaatatgatgtagatgagtgtagtcaa
agaagtttaagttatgcagctcctcttaaagttactttaagattaagtatttgggatata
gatgaagatacaggtactagagaaattaaaggaattaaagagcaagaagtatatatgggc
gatattccattaatgactaaaaatggtacttttattattaatggtacggaaagagttgtt
gtatcacaaatgcatcgttcaccaggtgtattcttttatcatgatgaaggaaaagtacac
tcttctggtaagcttttatattctgctcgtgttattccatatagaggatcttggcttgat
tttgaattcgatgctaaagatgttatttattttaggattgatagaaaaaggaagctttat
gctactactttactgagagctattggtatgaatactgaagaaattatgaaattttattat
aattcagtaacttataaatgtattaaaaataaaggttggtctgttaaatttatacctcaa
catattactgctcatcgtttaacaagtgatttagtagatgcagatacaggaaatgtttta
ctgaaagcaggacaaaaaattacaccgcgtttagctcaaaaatattttagtataggtcta
aataatattttagtaactcatgaaactttaatcggtaaatatctatctgaagatttaaga
gatcctgaaagtgatgaaattttagctaaaattggtgaaatgattactgctgatatgtta
caagttattaatgatcttaaaatcaaaaatgttaatgtattagtaatcaaccctcaatca
ggtccatatataagaaatacattgttcgctgataaaaatcaagaccgtgagacagcatta
tgtgatattttccgagtgttaagaccaggcgaacctgctaatattgaagcagctgaaagc
ctattttataatttattctttgatgcagaaagatatgatctttcagaagttggacgaata
aaaatgaattctagattagaattgaatatttctgaagaaattacggttttaacaattgat
gatattaaaaatattgtaagaattttagtagagcttaaagacggtaaaggtattatagat
gatattgatcatttaggtaatagaagggttagatcggttggtgaattgatagaaaatcaa
tttagaataggtttagtacgtattgaaaaatctgtaattgagaggatgtcggcaggtgat
gttgataccgtaatgcctcatgatttagtaaattctaaaattttagtttcagtagtaaaa
gaattttttagtacttcgcaattatcccaatttatggatcaaacaaatccattatctgag
ataactcataaaagaagactttcagctcttggacctggaggtcttagccgagatcgagca
ggttttgaagtacgtgatgtacaccctactcattacggtcgtatttgtcctattgaaaca
ccagaaggtcagaatattggtttaatcaactctatggctacttatgctagaatcaataaa
catggttttatagagagtccgtatagaagagttaaagatggatacgtaacagatgaggtg
gtatatctttctgctattgaggaaggtaaatataaaatagggcaagcaaattctaaggtt
gatcaagatggaaaactgcaaggggagttcattaattgccgtgttgagggtggaaatttt
gtaatggtagaaccgtatgaagtggacttcattgatgtaacgcctatgcaggtagtatcg
gttgcagcttctcttatacctttcttagaaaacgatgatgcgaaccgtgctttgatgggc
tcaaacatgcaaagacaagctgttcctttaattaaaactgaagcaccttttgtaggtact
ggagttgaaggagtagttgctaaagattctggtgcttcagtgcttgcattacatgatggt
attgttgaacgggtagactcaaatagaattgtgattagaactctagaacaaaaagttgat
ggttctccttctgtggatatttataatttgttaaaattccaaaaatcgaatcataatact
tgtatcaatcaaaagcctttagttaaggtcggtcattacgttaagaaaaatgatattata
gctgatggtcctagtacagataatggtgaaattgctttaggtagaaatgtacttgtggct
tttttaccttggaatggttataattttgaagattcaattttaatatctgaacgtatagta
aaagaggatgtgtttacatcaattcatattgaagagtttgaagtaatagctagagataca
cgccttggtcctgaagaaattacacgtgatataccgaatgtaagtgaagaagcgttgcgt
catcttgatgaagttgggataatttatgtaggtgcagaagtaaaagccggggatatttta
gttgggaaagtaacaccaaaaagtgaatctcctattacacctgaagagaaactactgcgt
gctatttttggagaaaaagcttttgatgtaaaagattcatcactgcatgtaccttctgga
gttagtggcactgtagtagaagtaaggatattttctcgtagaggtgtagaaaaagatcag
agagctattgctattgaaaaacaacaaattgaaaaattagcaaaagatagggatgatgag
ttagaaattattgagcattttgtgtttagttggcttgaaaagcttttagtaggacatgtt
attattagcggccctaagcaaataacagcaggacagactattactactgaaatgctaaaa
ggtttatctaaagggcaactttggcaacttatagtggaagatgcaaatgtaatgaatgaa
atagagcagatcaaaattcattatgatgagaaaaaacatgctctcgataaaagatttgct
actaaggtagagaaattgcaaagcggtgatgatttacctcagggggctttaaaagtagtg
aaagtatttattgccactaagcataaattacaacctggtgataagatggcaggaaggcac
ggaaataaaggtgttatttcacgtattgtgcctgaagaagatatgccatttttagaagat
ggcactgtggtagatatagtgcttaatcctctaggtcttccatcccgtatgaatatagga
cagattttagaaacgcatcttggatgggcatcgataaatttagcaaaaaaaatctctacc
ttagtaaaggaatataaagataataatatagatattgagcaaattaagaaattcttactt
gagctgtacggcaaggatattaattatatacttgaagggtcagaagaaggaattatctct
ttctgtaataaagtaagtaaaggtgtatattttgcaactcctgtatttgatggtgcaaaa
gttcaggatgttaaggatatgttaaaacttgctgaccaagatctttcaggacaagtaaaa
ttaattgacggtagaactggtgaatattttgatcgtttagtcactgtaggacacaaatat
ttgctgaaattacatcatttagtcgataataaaattcactctcgttctataggaccttat
agcttagtaacacagcaaccgcttggaggtaagtctcattttggtggacaacgttttggc
gaaatggaatgctgggcattacaagcttatggtgcagcttatacgttacaggaaatgtta
actgttaagtcagatgacgtaaacggtaggatcaaaacttatgattctatagtacgtggt
gaaaataattttgaatcaggcattcctgaatcatttaatgttatgataaaagaatttaga
tctttatgtcttaatgtaaagcttgaagtaactgctagtaaataa
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