Rathayibacter toxicus WAC3373: APU90_02855
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Entry
APU90_02855 CDS
T04269
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rtc
Rathayibacter toxicus WAC3373
Brite
KEGG Orthology (KO) [BR:
rtc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtc03019
]
APU90_02855
Enzymes [BR:
rtc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
APU90_02855
Messenger RNA biogenesis [BR:
rtc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
APU90_02855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_C
DEAD
AAA_19
AAA_22
ResIII
HA2_N
nSTAND3
T2SSE
UvrD-helicase
NACHT
AAA_30
FtsK_SpoIIIE
SLFN-g3_helicase
ABC_tran
Zeta_toxin
TsaE
Motif
Other DBs
NCBI-ProteinID:
ALS56838
UniProt:
A0A0C5BE52
LinkDB
All DBs
Position
631140..635042
Genome browser
AA seq
1300 aa
AA seq
DB search
MSEITIRYPTELPVSARREDIAAALRENQVVIVAGATGSGKTTQLPKICLELGRESIAHT
QPRRIAARTIAERIAEELDDEVGGLVGYQVRFTDRASASTRIKLMTDGILLNEMNHDRML
SRYDTIIIDEAHERSLTIDFLLGYLRRLLPQRPDLKVIITSATIDPESFARHFADASGTP
APVIEVSGRTYPVEIRYRPLVAEEPEEDDDTDTPDATSGSRDLMTGIIDALAELAREDPG
DVLVFLSGENEIRDAEDTIRGQNLSGTEVLPLYGRLSAADQHRVFEHARTPGIRRRVVLA
TNVAETSLTVPGIRYVIDGGTARISRYSARSKVQRLPIEAVSQASANQRSGRSGRTSPGI
AIRLYSEEDFLRRPEFTDPEILRTGLAAVILQMISLGLGDIASFPFLTPPDSRGIKDGLD
LLTELGALRTPVVPPPRDATYDHDTPKKNVTSGISRRGDDGGRLTRIGRDLARLPIDPRF
GRMVIESRKHGVTREVMAIVAGLTIQDVRERPLERRAQADQQHARFVDPSSDFLTLLNLW
NHLEKKQQELSSSAFRRMCKAEYLNYLRVREWQDVVRQLRQLARPLTLELNEPQIDPDGI
HRSLLAGLLSHLGIKDTTSQQAQRAAKNRERQNVQYLGARNAKFWIFPGSAVAKKLPDAV
MSAELVETSRLFARSNAAIDPAWAEPIAGDLVKRHFSEPHWEKSQGAAIAYEKVTLYGVP
IIPRRRVQFSRIDPAYARELFLRHALVEGEWESRHAFDRKNRALRAELEQLEERTRRRDL
LVDDEAVVDFYDRRIPRNITSVRSFDSWWRTAQHDDPDLLTMTQETLLPEDADEIDETAF
PTQWRQADQRFRLSYRFEPGTEDDGVTVHVPLALLPRVSPLGFDWLVPGLRDELVAAMIK
ALPKHVRRNVVPANDWARALTAALPRDVPNPPTESFPATLAGVIRREAGVVVRAEDFDLE
RIPAHLRVTFAVSDERGRSIAAGKELAPLVERLRGRVRDEVARVVEARVPDALERRGLTT
WDLPELPRVTDIRQGGNTIRAYPALVDDGDSVSIRLLATAEEQADEHPRGVRRLLLLATP
SPVAYVQQHLTSNEKLVLAQSPYQNTTALFTDCLVASIDAVLWRMKPGGMLFLRAEFTAV
RDRVSASVMDSMFETVKTVTTIHTTARGVEKALKTATSMTLLPALTDAREQLSGLIYPGF
VSATGIERLRHLPRYLAGITERFGTIGENVGRDRVWLNEVQAVHELYRSAGGAIPLPPHA
PEKLTRARWLMEELRISLFAQRLGTAESVSRQRISKVLAG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagatcaccatccggtatccgaccgaactgcccgtgtcggcacgacgcgaggac
atcgccgccgcactccgcgagaaccaggtcgtgatcgtggcgggagcgaccgggtcaggc
aaaacgacgcagctgcccaagatctgcctggagctcgggcgcgagagcatcgcgcacacg
cagccccgccggatcgccgcacgcaccatcgcggagcgcatcgcggaggagctcgacgac
gaggtcggcggactcgtcggctaccaggtccgcttcaccgaccgagcgagcgcgtcgacc
cggatcaagctgatgaccgacggcatcctgctcaacgagatgaaccatgaccggatgctc
agccggtacgacacgatcatcatcgacgaggcccacgagcgcagcctcaccatcgacttc
ctgctcggctacctgcgccgcctgctcccgcagcggcctgacctcaaagtgatcatcacc
tcggcgaccatcgaccccgagagcttcgcacggcacttcgctgatgcctccgggacaccc
gcgccggtgatcgaggtttccggccgcacctatccggtcgagatccgctaccgcccgctg
gttgccgaggagccggaggaggacgacgacaccgacacccccgacgcaacctcgggcagc
cgcgacctgatgaccggaatcatcgacgccctggccgagttggcgcgggaggatccgggc
gacgtgctcgtctttctttccggtgagaacgaaattcgcgacgccgaggacacgatccgc
gggcagaacctctccggcaccgaggtgcttccgctctatgggagactgtcggccgccgac
cagcaccgcgtcttcgagcacgcgcgcacccccggcatccgccgccgcgtggtactcgcc
accaacgtggccgaaaccagcctcacagtgcccggcatccgctacgtcatcgacggagga
accgctcgcatctcacgctacagcgcccgatcgaaggtgcaacggctgccgatcgaggcc
gtgtcgcaggcatcagcgaaccagcgctcaggccgctccggccgcaccagcccaggcatc
gcgatccgcctctattcggaggaggacttcctgcgccgcccggagtttaccgaccctgag
atcctccgtaccgggttggctgcggtcattctgcagatgatctcgctcggcctgggcgac
atcgcctcctttccgttcctcacgccacctgactcgcgcggcatcaaggatggcctcgac
ctcctcaccgagctcggcgccctgcgcacccccgtcgtcccccctccgcgagatgccact
tatgaccacgacacgccgaaaaagaacgtcacaagtggcatctcgcggaggggggacgac
ggggggcggctgacccggattgggcgagatctggcgcggctgccgatcgatccacgcttc
ggacggatggtgatcgagtcgcgtaagcacggcgtcacccgcgaggtgatggcaatcgtg
gcgggactcaccatccaggacgtgcgcgagcggccgctcgagcgccgcgcacaggccgac
cagcagcatgcccgcttcgtcgacccctccagcgacttcctcaccctgctcaacctctgg
aaccatctcgagaagaagcagcaagaactctcctccagcgccttccgtcggatgtgcaaa
gccgagtatctgaattacctgcgcgtgcgggagtggcaggacgtcgtccgccaactgcgc
cagcttgcccggccgctcacactcgagctcaacgaaccccagatcgaccccgacggcatc
caccggagtctgctcgccgggctgctctcgcacctgggaatcaaggacaccacctcccag
caggcgcagcgcgcggccaaaaaccgcgaacgtcagaacgtacagtatctcggagcgcgc
aacgccaagttctggatcttccccggcagtgccgtggcgaaaaagctccctgacgccgtg
atgagtgccgagctcgtcgagaccagccgactcttcgcgcgctcgaacgccgccatcgac
cccgcctgggccgagccgatcgcaggcgacctagtgaagcggcacttcagcgagccacac
tgggagaaatcgcagggcgccgctatcgcctacgagaaagtcacgctctacggagtcccg
atcatcccccgccgacgggtccagttctcgcgcatcgaccctgcctacgcccgcgaactc
tttctccggcatgccctcgtcgagggcgagtgggagtctcggcacgccttcgaccgcaaa
aatcgcgcccttcgcgccgagcttgaacagctggaggagcgcacccgtcgccgcgacctg
ctcgtcgatgacgaggccgtcgtcgacttctatgaccgccggatcccgcgcaacatcacc
tcggtccgctccttcgactcctggtggcgcacggcccagcacgacgaccccgacctgctg
accatgacgcaggagacgctgctcccggaggacgcggacgagatcgacgagaccgccttc
ccgacacagtggcgccaggcggaccagcgcttccgcctcagctaccgcttcgagccaggc
acggaggacgacggcgtcacggtgcacgtgccgctcgcgctcctgccccgcgtgagcccg
ctcggcttcgactggctcgttccgggcctgcgcgacgagctcgtggcggcgatgatcaaa
gcgctgcccaagcatgtgcgccgcaacgtcgtgccggccaacgactgggcgcgcgcactg
accgccgcgctcccccgcgacgtaccgaacccgccgacggagtcattccccgcgaccctc
gccggagttatccgccgcgaggcgggcgtcgtcgtacgcgccgaggatttcgacctcgag
cgcatccccgcgcacctgcgcgttaccttcgccgtctccgatgagcgcgggcgttcgatc
gcagcgggtaaggaactcgcgccgctggtcgaacggctacgcggcagggtgcgcgacgag
gtcgcgcgggtggtggaggctcgagtgcctgacgcgctcgaacgccgcggcctgacaacg
tgggatctccccgagctgccgcgcgtcactgacatcaggcagggtggcaacaccatccgc
gcttatccggcgctcgtcgacgacggtgactcggtgtcgatccggctgctagctacggcg
gaggagcaggccgacgagcatccccgcggcgtgcggcgcctcctgctgctcgccacgccg
agcccggtcgcctacgtgcagcagcacctcacctcgaacgagaagcttgtcctcgcgcag
agcccctaccagaacaccaccgcgctcttcacagactgtctggtcgccagtatcgacgcc
gtgctgtggcggatgaaacccggcggcatgctgttcctccgtgccgagttcactgccgtg
cgcgaccgtgtttcggccagcgtgatggacagcatgttcgagacggtgaagaccgtgacc
acaattcacacgacggcccgcggcgtcgagaaagcgctcaagactgcgacgagtatgacg
ctgctccccgcgctgaccgacgcgcgcgagcagctctcgggcctgatctaccccggcttc
gtttcggcgaccggcatagagcggctgcgccatctgccccgctaccttgcggggatcact
gaacgtttcggcacgatcggcgagaacgtcgggcgggaccgggtctggctcaacgaggtt
caggcggtgcatgagctgtatcgatcggccggaggagcgatcccgctccccccgcacgcg
cccgagaagctgacccgagcgcgctggctgatggaggagctgcgaatcagtctcttcgcc
cagcgtctgggcaccgctgaaagcgtgtcacgacaacggatcagcaaggtgttggcgggc
taa
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