Rissa tridactyla (black-legged kittiwake): 128900492
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Entry
128900492 CDS
T09443
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03013
Nucleocytoplasmic transport
rtd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128900492 (UPF1)
03015 mRNA surveillance pathway
128900492 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtd03019
]
128900492 (UPF1)
Enzymes [BR:
rtd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
128900492 (UPF1)
5.6.2.5 RNA 5'-3' helicase
128900492 (UPF1)
Messenger RNA biogenesis [BR:
rtd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128900492 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
128900492 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
128900492
NCBI-ProteinID:
XP_054037652
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All DBs
Position
22:1708974..1731722
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AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPGQGQG
PPGAGQGPPGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagaccctcaccttcctggacaccgaggag
gccgagctgctcggtgccgacacgcagggctccgagttcgagttcaccgacttcactctc
cccagccagacccagaccccgcccgggcccgggcaggcggggccgggacagggccaaggg
cctcccggagcgggacagggaccgccgggaccgatcgaagcgcaggttaatggacctgat
ggcattctgcaaaacggagctgtggatgataacgtggctaaaaccagccagcttctggca
gagttgaattttgaagaagatgaagaagatacctattacacaaaggatcttcctgtgcat
gcttgcagttactgtggtatccatgaccctgcttgcgtggtttactgtaacaccagcaaa
aagtggttctgtaatgggcgtggaaatacatctggcagccacattgttaatcatctggtg
agagcgaagtgcaaagaggtgactctccataaagatggacctctaggagagaccgtcttg
gaatgttataactgtggatgtcgtaatgtgtttctccttggctttattccagctaaggca
gactctgttgtcgttttgctgtgcaggcagccatgtgccagtcagagcagtttaaaggat
attaattgggacagttcacagtggcagcctctcatccaagatcgctgtttcctttcatgg
ctggtaaagattccatctgaacaggaacagttgagagcacgtcagattacagctcaacag
attaacaaactggaagaactttggaaggaaaatccatctgcaacccttgaggacttggaa
aagcctggagttgatgaagaaccacagcatgtcctgcttagatatgaagatgcttatcaa
taccagaatatatttggtcctctggtcaagcttgaggcagactatgacaagaaactcaag
gagtctcagacccaagataacatcacagtcagatgggacctgggcttgaacaagaaaaga
attgcttatttcactttgccaaagactgactcagatatgcgtcttatgcaaggagatgag
atctgcttgaggtacaaaggagacctggcccctttatggaaaggaatcggtcatgttatc
aaagttcctgatagttctacagattatggtgatgagatagccattgagctgaggagcagc
gttggagcgcctgtggaagttactcataacttccaagtggattttgtgtggaagtctact
tcatttgacaggatgcagagtgctttaaaaacattcgctgtggatgagacttcagtgtct
gggtacatctatcacaaactgttaggtcatgaggtagaagatgtaattattaaatgccag
ttgccaaagcgctttacagcacaaggacttcctgatctcaaccattctcaggtttatgct
gtgaagactgtcctgcagcgtcctctgagccttattcagggtccccctggtaccggaaaa
acagtgacatcagccacaatcgtctatcatctggctagacagggcaatgggcctgtgtta
gtgtgtgctccgagtaatatagctgtagatcagttgactgagaagatccatcaaactgga
ctgaaagtggttcgtctgtgtgctaaaagtcgtgaggcaatcgactctcctgtgtccttc
ttggcattgcataaccagatcagaaacatggatagcatgccagaacttcagaaactgcag
cagcttaaagatgaaactggagaactgtcatctgctgatgagaaacgttaccgtgcgctg
aaacgaacagcagagcgtgaattgcttatgaatgcagatgtgatctgttgcacgtgtgtg
ggagctggtgatccaagacttgcaaaaatgcagttccgctccattctgatcgatgaaagc
acacaggctactgagccagagtgcatggtgccagttgtcctgggagcaaaacagcttatt
cttgtgggtgaccactgccagcttggtcctgttgtgatgtgtaaaaaggctgcgaaggct
ggtctgtcccagtccctcttcgagaggctcgtggtgctgggcattcgtcccatccgcctg
caagtgcagtaccgcatgcaccccgcgctcagcgcttttccatccaacatcttctacgag
ggttcgctccagaatggtgttactgcagcggatcgtgtgaaaaagggttttgatttccag
tggccacagccagataagccgatgtttttctatgttacacaaggacaggaagaaattgcc
agctcaggcacttcttacttgaacaggacggaagcagccaatgtggagaagatcactaca
aagctattgaaagctggtgccaaaccagatcagattggcattattactccatatgaaggt
caaagatcctatctggtccagtacatgcagttcagtggttccttgcatacaaagctctac
caggaagtggaaattgcaagtgtggatgccttccagggacgggagaaggactttattatc
ctttcttgcgtgagggccaacgaacaccaaggaatagggtttctgaatgaccccaggcgt
cttaatgtagctcttacaagagcaaggtacggagtaattattgttgggaacccaaaagcg
ctgtctaaacaaccactttggaatcacctgctgaattactacaaggagcagaaggttctg
gtggaggggccactgaataacctccgggaaagcctcatgcagttcagcaagccccggaaa
ctcgtcaataccatcaacccaggtgcccgtttcatgactactgccatgtatgatgcgcgt
gaggcaattattccaggatctgtctatgaccggagcagtcaagggcgcccatccaacatg
tacttccaaacccatgaccagatcgggatgattagcgctggccccagccatgtcactgct
atgaacattcctatccctttcaaccttgtgatgccaccgatgccaccaccgggatacttt
ggccaggctaatggaccagccgcaggacgtggggcgcccaaaggaaagactggtcgtggt
gggcgccagaaaaatcgttttgggattcctggaactagtcagtcaaaccttccaaacagt
caagcgagccaagatgtggtgtcccagcctttctcccagggtccactgactcaggggtat
atctccatgagtcagccatcgcagatgagtcagcctgggctctcccaaccagaactatca
caggacagttaccttggtgatgagtttaaatctcagattgacgtggcgctgtcacaggac
tctacttaccagggtgaacgtgcatatcaacatggtggagtgacgggactgtcacagtat
tag
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integrated database retrieval system
