Rissa tridactyla (black-legged kittiwake): 128909442
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Entry
128909442 CDS
T09443
Symbol
RPAP1
Name
(RefSeq) RNA polymerase II-associated protein 1
KO
K20826
RNA polymerase II-associated protein 1
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtd03021
]
128909442 (RPAP1)
Transcription machinery [BR:
rtd03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
128909442 (RPAP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP1_C
RPAP1_N
Motif
Other DBs
NCBI-GeneID:
128909442
NCBI-ProteinID:
XP_054057095
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Position
4:44968547..45013237
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AA seq
1435 aa
AA seq
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MLSRPKPGESEADLLHFQNQFLAARASPAVKIVKKADKRKGEEGSTDAERPPLQDCKDVV
MLDDFPDTLPALTPAPPKKSKIKSACVHFEDEDPEERLESHDQHITAVFSKIIERDTSAV
AVTMPVPTGDPFPRTFHRSEIKSEVKVGSGRKSIFAQKMAARRAAERAATTPSAAECVQI
KSAAPDALDPEGSTGEAPLPSIREDKAGDFLTSQRPCLITGEGLGSQKSEEEAQAIHKEN
LEKLQSMSEEEILQEQEKLLAQLDSSLVAFLKSRRSGNESQKKELKMEQNRLEEFVESLP
VAQHGVGSCLSMQESGLEESVRKEENMKVEITDDDLPVKPKKEWIHMDNVEFEKLEWMKD
LPSPRQKKTKKGMQARFSLKGELIPADADLPTHLGLHHHGEEAERAGYSLQELFHLSRSQ
VIQQRTLALQVLGRIVQKARAGEFASSLKGSVLRLLLDAGFLFLLRFSLDDAVDNVMAAS
VGALRALLVSLDDEKYLDWTFSWYQGMAAFPFVPNNEEEEEEEEEELNGTEKSQDKKLKD
ENKPDPDVARYDVVKGLLKTRIQHRLRYILEVVRPVPTVVLDILHILTHIARHSSEACSQ
LLDCPRLIETIVREFLPTQWDPQVAEPGCLLTSLHGVACATAMKFIRVLAYGGRNATARL
LNKFEMKSRLSRFIAEDPLDLLLPREEAIRLSTEAFRLWAVAAGYGQGCDLYRDLYPVLV
RILQSLPELLSACRGKSPVIELLVQRAAAVVTLLIHVTQTAGYTAELQAKLSSSEDTEPI
APPPVAWNQVSGLQPFLETSLKKCLQEISQTETWQTLQPLTTTYLIYLGVYYSACSQQPS
VNPIDCLEELERLTSEVLQPLLSQPAVCSMWDLLRPCSALCNPLSCSPAPESVFSIASLS
CTGGKPPLSLVGSKSPFPFLTALLFLINSITHVHKGLTSKYSSVLGFRGLKDYLHQSWQT
GPPSVTPSSAWILRHEYHLQYFVLALTRRMVGSCPDYTQHASLHHCVSMALLSRLLPGSE
HLAYEVLLDVAFNPEFLPEGKAGGPEAADFSDILHLGTSAKLAQPGSVAAFFSKPTRGAL
LRESYQNLPFIRSCYLSHFVHLQPALTRSQASYQGRNYLIQSMLLPEVKGPILPSDWPFF
PLISLYNKVTNAETRGAVLNSLPLDLVNTVTWNLQWVLLLETWRAKTLQSIPTAAKLARL
MCVFLTGGDLFLEAPIHCYTAALLSVYCQPKALDSLNLDAPLPGLASFHDLYISLLEQFE
GVSFGDPLFGVFVLLPLQKRFSVHLRLSVFGEHTSILRALGVPLQQFPVPLERYTSPPED
NLNLLRLYFRTLVTGALRHSWCPVLYVVAVTHVNSFIFSQDSTTQEIDAARKSMLRKTWL
LVDETLKKHLLYYRLLNAESPLGFDLYEQLPAMRLKYLQMVTQKENKENAPALVS
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atgttgtcacgaccaaagcctggggagtccgaggcagacctgctgcactttcaaaaccag
ttcctggcagccagagcttcacctgcagtgaagattgtgaagaaagccgacaagaggaag
ggggaggaaggcagcacagatgctgagagacccccactgcaggactgcaaggatgtagtg
atgttggatgattttcctgatactctcccagctctaactccagctcctccaaaaaagtcc
aagattaaaagtgcctgtgtccacttcgaggatgaagatccagaggaaagactggagagt
catgatcaacacattacggcagtcttcagcaaaattattgagcgagacacaagtgcagta
gcagtaaccatgccagtgcccacgggagacccatttccaaggacatttcaccgctctgag
ataaaaagtgaggtgaaggtgggatctggtagaaaaagcatctttgcacaaaagatggca
gcgagaagagctgctgaaagggcagcaacaactccctctgctgccgagtgcgtgcaaata
aaatcagctgctccagatgccctggatcctgagggatcaacaggagaggcacctctcccc
agcatcagggaggataaagctggtgactttctgacctctcaacggccttgtctcataacg
ggagagggtcttggaagccaaaagagcgaggaggaagctcaagctattcacaaagagaac
ttggagaagctgcagtccatgtctgaggaagagatactgcaggagcaggaaaagcttctg
gctcagctggattccagtttagtggccttcttaaagtcacgacgtagtggcaatgaaagc
caaaaaaaggaattaaaaatggaacagaacagactggaggagtttgtggaatctctgcct
gtggctcagcatggtgtaggatcatgtctttccatgcaggagtcaggtctggaagaatct
gtaagaaaggaagaaaacatgaaggtagaaatcacagatgatgatctgcctgtgaagccc
aagaaggaatggattcacatggacaacgtggagtttgagaagctggaatggatgaaagat
ttgccctcaccccggcaaaagaaaaccaaaaagggaatgcaagctcgattcagtctaaaa
ggagaattgattcctgcagatgctgatttaccgacacatctaggcctgcatcaccatggc
gaagaggcagagagggctggttattctctccaagagctctttcatttgtctcgcagccaa
gttattcagcagcggacactggctctgcaggtcttgggtcgtattgttcaaaaggccagg
gctggagagtttgcttcctccttgaagggcagcgttctgcgtctgctgcttgatgctggg
tttctcttcttgctgcgcttctcgctggatgatgcggtggataatgtcatggcagcatct
gttggtgctctccgggctctgctggtgtcacttgatgatgagaaatatcttgattggact
ttctcatggtaccaagggatggctgcattcccctttgtccccaacaatgaggaggaagaa
gaggaggaagaggaagaattaaatggaacagagaagtctcaagataaaaaactaaaggac
gaaaacaagccagatccagatgtggcccgatatgatgttgtaaagggacttttgaagaca
cggatccagcaccggctgaggtacatcctggaggtggtacgacctgttccaacagtagtc
ctggatatactgcacatccttacccacatagcaaggcactcctctgaagcgtgcagccag
ctgcttgactgtcctcggttgattgagaccattgtcagggaatttcttcctactcagtgg
gatccccaagtggctgaaccagggtgtttactcaccagcctccatggagttgcttgtgct
actgctatgaagttcatcagagtgttggcatatggaggccgaaatgcaacagccaggctg
cttaacaaatttgaaatgaaaagtcggttaagtcgatttatagctgaagacccactggat
ctgctcctgccaagggaagaagccatcaggctaagcaccgaagcgttccggttgtgggct
gtggcagctggttatggtcagggctgtgatctctacagggatctctatcctgtgctggtg
aggatactgcagtcactgcctgaattgctcagtgcgtgtcgtggaaagagccctgtgatt
gagttgttagtccagcgagctgccgcagtagttactctgctgatacatgtgacgcaaaca
gcaggctacacagcagagctgcaggccaagctgagcagctcagaagatactgaaccgatt
gcacctcctccagtagcatggaatcaagtgtcaggcttacagcccttccttgagaccagt
ctgaaaaaatgcctccaggagatatcccagacagaaacttggcaaactctccagcctctg
accacaacttatctgatctacctgggagtttattatagtgcttgcagccaacagccatca
gtcaatccaattgactgcttagaggaactggaacgtttgacatctgaggtgctgcagccc
cttctcagccagccagccgtatgcagcatgtgggacttgctcaggccatgttctgctttg
tgcaaccctctgtcctgttccccagcaccggaatctgtcttcagcattgcatccctgagt
tgcactggaggcaaacctcctttgagcctggttggctccaagtcacctttccctttcctc
actgccctcctgtttctcatcaatagcatcactcacgttcacaagggcctgaccagcaag
tacagctctgtgctgggcttcagaggcttgaaggattatctgcatcaaagctggcagacc
ggacctccctctgtaactccctcatctgcgtggatcctgcgccatgaatatcatctgcag
tactttgtattagcgttgactcggagaatggtaggctcttgtccggattacacccagcat
gcctcactccatcactgcgtttccatggcattgctaagccgtctgttgccagggagtgag
catctggcttatgaggtcctactggatgttgcctttaatccagagtttcttccggaaggg
aaagccggagggccagaagcagctgacttctctgatatcctgcatctgggtaccagtgcc
aaactggcacagcctggctctgtggcagcgtttttttcaaaacctactcgtggtgccctg
ctgagagaatcgtaccagaatctgcctttcatccgctcctgctacctttctcattttgtc
cacttgcagcctgcccttacgcgttcccaagcatcctaccaaggacggaattacctcatc
cagtcaatgctgcttcctgaggtcaaagggcccatcctgccttcagactggccattcttt
ccacttatcagcctctacaacaaagtgactaatgcagagacacgtggggctgtactgaat
tctctcccacttgatcttgtcaacactgtgacctggaacctgcaatgggtccttttgctg
gaaacctggcgtgctaaaacccttcagagcatccctactgctgccaaacttgcacggctt
atgtgtgtcttcctcacaggtggtgacctctttctagaagcaccgatccactgctacaca
gctgcccttctctctgtgtattgccaacccaaggcattggactccctgaacttggatgct
cctctccctggtctggcgtccttccacgatctctatataagtcttctggagcagtttgaa
ggtgtctcctttggagatccactgtttggagtctttgttcttctgcctctacagaagcgt
ttcagcgttcatctgcgtctctctgtttttggggagcacacaagtatcctgcgggcactg
ggagtgccgctccagcagtttcctgtgcctcttgagcgatacacttcgcctcctgaggat
aacctgaacctcctgcgactctacttccgaacactggtcactggtgcactgcgccacagc
tggtgccctgttctttatgtggtggctgtgactcatgtgaacagctttattttctcccaa
gacagcactacgcaggagattgatgctgctcggaaaagcatgctgcggaagacatggctg
ttggtggatgagaccttgaaaaagcacctactctactacagactgctgaatgcagagagc
cctttgggatttgacctttatgagcagctccctgctatgcgactgaagtacctgcagatg
gtgacacagaaagaaaataaggagaatgcaccagcgctagtctcatag
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