Rissa tridactyla (black-legged kittiwake): 128917365
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Entry
128917365 CDS
T09443
Symbol
SETX
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
senataxin [EC:5.6.2.-]
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtd03021
]
128917365 (SETX)
Transcription machinery [BR:
rtd03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
128917365 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
AAA_30
Viral_helicase1
UvrD-helicase
AAA_22
AAA_16
SLFN-g3_helicase
SAS4
ResIII
RNA_helicase
DUF4164
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
128917365
NCBI-ProteinID:
XP_054076211
LinkDB
All DBs
Position
14:complement(1228369..1259676)
Genome browser
AA seq
2816 aa
AA seq
DB search
MSTCRWCTPSGSDTTEFLKSYASKQLSQEDLEASNDDLCYCLECVVEYHKAREKLPWLHE
VLWELETSRLVAHIEKSMSEEAGEDDELFIVDENGETQLSGYVGPDFENNLRVPLLEILK
YPYLLLHEKVSELCVEVLCRMEQSHSSFQVFEKYPGIYLFLVHPNEVIRRWAILTARNLG
KVDRDDYYDLQEVLTCLFKVIELGLFESPDIYSSSMIEMGKLILLPSHLYDTSNYKNYWL
GICMLLTVLEEQAMDSLLLGPDKQNDFMQSILHTMEKEADDDSTDPFWPALHCFMVILDQ
LGSKVWGQLIDPVQAFQTIINSVSYNNEIKNIRSSYKRTKSEPESDYGDDMVTCSQIVYN
YNTEKPQKDTGWKAAICPDYCPNMYEDMQTLANVLQSDLGRDMRVHHSTFLWFIPFVQSL
MDLKDLGVAYIVEVIHYLCSEIKDILNERIQQCDKISEFFLLILVSIIELHRNKKCLHLL
WISSQEWVEAVVRCAKLPAVAFTRCTEKASGHCGRGLSAASLQASNSVQHACVQLIRSLL
REGYQIGQHSLCKQYLDKLNLLLRGNLSLGWQLNIQETQELQMCLKQVIRSIKSRAVNTS
VPVGNNANSTTLPTVSTKQEKSAQDDGGKMSAHGSGDLSSPFAVKKEGRDEDCQENLFPR
TKSASEEECRGASKSSRSWTSTEGLCVNIKKELNDFTTQEYDCPQNSLATKVCGKVQESR
NNYLVAGKFDTDNQHFNPNAQHSDFGKGGELANKCEAGSITPVRLATQSHIGSPEHVYSS
DTKESNTSPSSSSKFKVDAHRLSSLKSKIQKIGWLPKVSQPAKPRDLKNCSLATSASKAE
MEQPKLCTGYPCTSKDCHKHQTVCENEISVDTPSSRSCEKSADSAFQFELAPTKQVSKET
PLDRISSFKNEPGVQENKDDGILLSGISDTSLKKVSTEEKSSSLLKSVFKTDSDIQTSDW
EQPNLNDLVKYDSKDQISKTFCMDKTSANGHVPPSSENQSDISHAAAPIRPLSVKCESSD
RLFKFSKYFKRENNSVRKKEEDFVKMVSEDNTSTDSQVDRELSKLSLAAYAKSVNFPFDS
SQESSVHHNVGDIKRKVKGAVRSSNDGQSTESPCDADCLDNQVIIISDSSDEEVVVADKE
ETKKMNENVCPEKQPSTSSSVSDSNTKLESKTPPSPPVSLEDCESQYFEFETEGDVFSVW
QDTQAYSMEATQEYKQGNASTLVDASNSDGLLHDHTNEWGYDVDYISEDSTEEKANLVEK
QIENIPHQKEAGNTEVVTNSTLQESISKGNTEDQLENSADKGAATAKDFTLDSKLTEPRA
STSNISLASKLALKKNSTSPRKNIAKSKVAGTIQRSPKKPVLKPAQNKKLPQSTSKNFQP
VRSMPAVIPPRKVRQCPAPTSTVEKLGLKKAPRKAFELSQRSLESVAQLRSYGKAAGRVA
QKQKIKQIAPQNLSVKHNKKFLACQDLQFLRQTRPKRSVRVKNLAGRSESRNKKVSKVDA
KSTEQKPKSFQLGSVENQREKKREETDSPSANERKFEISSVEEETCLSKMPISSDWSRKS
EDNSMMAPPAPMDSSLSSAALVGDDKDEPSGKGCIVQPEGEKTTSKENGSNPNENSEDDD
DLFLTQLDPVDMELCSEEESVQGIAIASKKPEEMDTAESLQQNESSTIVKCKYTDCIEKV
ENPGEYCSKHAATSSGGDHLFAKPSLLPPSKTGKPSTTKIFSSASSSRNAAFSKDLEGFK
KLSPASKSKVNAAKPVVARPSNAKAIPTGNQTCKSPSFSNVPQPSVSRNVLQPQNRQNDN
ASNIYSRPAREAYYSSFSGVQQRDHSIFVNAVLKWTYEMFVSSSQFGPPSSLLHSLVASV
PVQFHGYNDYFNTFFPLMMLNAFETLAQEWLEKERGREKNYYFYLQNFSADLNTADFTAH
FQEGDLAKQLHPKEDDLIFLVVQKKKDAFGEESEMENHIVNHVGLVTRFSRASGCLTRQR
EQHTVCHLSVQTRGNLSFFINKQVKCVVVGSLVTTHRTFKGLLLLSRSPLAKPIINPSYS
DFCPRDFTTASESAASDVNEYNEGQKRAIETAYAMIKQHPGLPKICLIHGPPGTGKSKTI
VGLLSRVLRENTRNEKATQKTNSKIKPNRFLVCAPSNAAVDELMKKIIVAFKEKCQNKQE
PLGNCGDIKLVRLGAEKAINSEVRGFSLDKQVEHRMKRMPSDYDQDIQKKKAALDQKLDM
LSRQRAMHRCEKRESQMLDDEIARLSKERQQLASQLKEVRGHSQKVQTAIILESDIICCT
LSTSGGSLLESAFWRQGLDPFSCVIVDEAGQSCEVETLIPLIHRCNKLVLVGDPKQLPPT
VKSIKAQEYGYDQSLMARLHRHLEEQVQKNVLRSLPVVQLTLQYRMHPDICLFPSNYIYG
RTLKTDKATEENRCSSEWPFQPYLIFDVGDGREERDNDSFSNPQEVKLVMELIRTIKEKR
KDLGLRRIGIITPYSAQKKKIQDQLDRVFKNNSPGEVDTVDAFQGREKDCIIVTCVRANN
TKGSIGFLASLQRLNVTITRARYSLFILGRLKTLMDNKDWNGLIQDAQKRGAIIKTSEKS
YRNDALKILKLKPTVPLPANAGTKKPPLLQACSSSSKMDELANPREASSPRDVPADAGHA
VPQGSRRPQQPPGAQAADSRRGSAPAPVEAPALPADREKPRDPRLASMASRTETKGKEQA
SKGSSRTAQSNPGSTSQQGLRVSSSARDRISRTETSKQPHQTMGQRDMPSTSPYAARHEG
DRRASVLKSGSKAYSEGGQSNSSKWDKDYRVLTRRTSEESLENRDSNGAKRRKTFH
NT seq
8451 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgtcgatggtgtacacctagtggttctgacaccactgagttcctgaagagc
tatgcttctaaacagttgtcccaggaagatcttgaagcatccaacgatgatctctgttac
tgcctggagtgtgtggttgaataccacaaagcaagggaaaaattgccatggttgcatgag
gtcttgtgggagttggaaacttcccgtcttgttgcccacattgagaaatccatgagtgaa
gaagctggagaagatgatgagttgtttatagtggatgagaatggagagacacagctgtcg
ggttatgtgggcccggattttgagaataacctgcgagtgcctcttctagaaatactgaaa
tatccatatctgctgctgcatgagaaagtcagtgagctgtgtgtagaagtgctctgtaga
atggaacaaagtcacagctcctttcaggtctttgagaaatatccaggaatttatctcttt
ttggtacacccgaatgaagtgattcgtcgatgggccatcctaacggcaaggaatttaggg
aaggttgacagggatgattactatgacctacaggaagtattgacttgcttgttcaaagtt
attgagttggggctttttgagagtccagatatttacagctcttcaatgattgaaatgggt
aaactcatccttctgccatctcacttatatgatacttccaactacaagaactattggcta
ggaatttgtatgttgctaacagtgctggaagaacaagctatggactccttgttactgggc
ccagacaaacaaaatgatttcatgcagtctatacttcacaccatggagaaagaagcagat
gatgattctactgaccccttctggccagcgctgcattgtttcatggttattttggatcag
ctcggatctaaagtatggggtcagcttattgatcctgtccaagcctttcaaaccattatc
aacagtgtgagctacaacaatgaaataaaaaatatacgcagtagctataagaggacaaaa
tctgaaccagagtcagactatggtgatgacatggttacttgcagtcagattgtgtataat
tataacacagaaaagcctcaaaaggatactggatggaaggctgccatttgtccagactac
tgccccaacatgtatgaagatatgcaaacactggctaacgtgcttcagtctgatcttggc
agagatatgcgtgtccatcatagcacgtttctgtggttcatcccttttgttcagtcgctt
atggatctcaaggacttgggtgtagcatatatagtagaagtcattcactacctctgctcg
gaaattaaagatattctcaatgaaagaatccagcagtgtgacaaaatctctgaatttttt
ctgctgatcttggtgtccattattgaactacacagaaataaaaagtgcctgcatttgcta
tggattagctcccaagaatgggtggaagcagtggtgagatgtgctaagctcccagctgta
gcatttacacggtgcactgaaaaagcgtctggacactgtgggagaggtttatcagcagca
tctttacaagcttctaactctgtgcagcatgcctgtgtgcagctgatacgcagccttctt
agagaaggctatcaaattgggcagcattctctttgcaagcaatacctagacaaactcaat
cttcttctgcggggaaatctatctttaggttggcagctgaacatccaggaaacccaggaa
ttacaaatgtgtttaaagcaagttataagaagtataaagagcagagcagtgaatacctct
gtgcctgtaggaaacaatgcaaactccacaactttgcctaccgtttctacaaagcaagag
aagagcgcacaagatgatggaggcaagatgagcgcacatggtagtggtgaccttagttca
ccatttgctgtcaagaaggaaggcagagatgaagattgtcaagagaaccttttccctaga
acaaagagtgcctcagaagaggaatgtagaggtgcatctaaaagttcaagatcttggaca
tccacagaaggcctctgcgtgaatattaaaaaggaacttaatgacttcacaactcaggaa
tacgactgcccacagaactctttggcaacaaaagtatgtgggaaagttcaggaaagtagg
aacaattatcttgtggcagggaaatttgatacagataatcagcactttaatccaaatgcc
cagcattcagattttggaaaaggtggagagttggcaaacaaatgtgaagcaggatccata
acaccagtgcgtctggctactcaaagtcatattggttctccagaacatgtttacagctca
gatacaaaggaaagcaatacgtctcctagttcatcttcaaaatttaaagtagatgcacat
agactctcaagtttgaaaagcaagatacagaaaattggatggctcccaaaagtatcgcag
ccagcaaagccacgtgacttgaaaaactgcagtttagcaacaagtgcttcaaaagcagag
atggagcaacctaagttgtgcactggctatccgtgtacgagcaaagattgtcataaacac
cagactgtgtgtgaaaatgaaatctctgttgatactccatcttcaaggagttgtgaaaaa
agcgccgacagtgcttttcaattcgaactggcccccactaaacaggtgtcaaaagaaaca
ccactagatcgcattagctcctttaaaaatgagcctggtgtgcaggaaaataaagatgat
ggtattttgctttcagggattagtgacacctcactgaaaaaagtatccactgaagaaaaa
tcaagttcattgttgaagtctgtgtttaagacagacagtgacatacaaacttcagactgg
gaacagcctaatttaaatgacttggttaaatatgactctaaagatcaaatttcaaagaca
ttctgtatggataaaacttcagcaaatggtcatgttccacctagctctgaaaaccagagt
gatatatcccacgctgctgctccgattaggccactgtcagtgaagtgtgaatcaagtgac
aggttgttcaaattttcaaaatatttcaagagagaaaacaattcggtaaggaagaaagag
gaggattttgtgaagatggtttctgaagataatacttcgacagactcccaggttgacaga
gaactcagtaaattatctttagctgcgtatgccaaaagtgtcaattttccctttgattca
agccaagaaagctcagtacatcataatgtgggtgatattaaaaggaaagtgaaaggtgct
gtaagatcttccaatgatggccaaagtactgagtctccctgtgatgcagattgccttgac
aatcaagtcattataatttcagactcttctgatgaagaagtagttgtggctgacaaggag
gaaacaaaaaaaatgaatgaaaatgtgtgtcctgaaaagcaaccttcaacttccagcagc
gtttctgatagtaataccaaattggaatcaaagacgccgccaagccctcccgtgtcactg
gaagactgtgagtctcagtactttgaatttgaaacagaaggtgatgtcttttcggtttgg
caagatactcaagcatatagtatggaagcaactcaagagtataaacaaggtaacgcttca
acattggttgatgctagtaattcagatggcttactgcacgatcacacaaatgagtggggc
tatgatgtggattacataagtgaggatagcacggaagaaaaagcaaacttggtagaaaag
cagatagaaaatattcctcatcagaaagaagctggtaatacagaagtagtaactaattcc
acattacaagaatctattagtaagggaaacacagaagatcaactggagaattctgcagac
aaaggtgctgctactgctaaagacttcaccctggactcaaaattgactgaacccagagca
tctacatcaaacatctcgttagcttcaaagctggcacttaagaaaaatagcacgagccca
cggaagaatatagcaaaatctaaggtagcaggaactatccaaagaagtcctaaaaaacct
gttctaaaaccagcacaaaataaaaaactacctcaaagtacatcaaaaaattttcaacct
gtcaggtcgatgcctgctgtgattcctccaaggaaggttaggcagtgtcctgcaccaaca
tcaactgtagaaaaacttggtctgaaaaaggcaccccgcaaagcatttgaattatcccag
cgctccttagaaagtgtagctcaattgcgcagctatggtaaagccgcagggagggttgca
cagaaacagaagattaagcaaattgctcctcagaatttgtctgtaaaacataataaaaaa
tttctagcctgccaagaccttcagtttttgaggcagacgaggcccaaaagaagtgtcaga
gtgaaaaatcttgcaggacgttctgagagtagaaacaaaaaagttagcaaagtggatgca
aaatctacggaacaaaagcctaaaagttttcaactgggatctgttgaaaaccaaagagag
aaaaaaagggaggagactgactctccctctgccaatgagagaaaatttgaaatctcctct
gtggaggaggagacgtgtctctctaaaatgcctatttcttcagactggagcagaaaatca
gaggataacagcatgatggctcctcctgcgcctatggattcaagtctctcttctgctgca
cttgttggagatgataaagatgaaccttcaggaaaaggttgcattgtccagcccgagggt
gagaagacaacttcaaaagaaaatgggtctaacccaaatgaaaacagtgaagatgacgac
gatctgtttttaactcagttagatcctgtagatatggaattatgttcggaggaggaaagt
gttcaaggtattgctatagctagtaaaaaacctgaggaaatggatactgctgaaagcctt
cagcagaatgaatcctcgactattgtgaaatgtaagtacacagactgtatagaaaaagtg
gaaaacccaggagagtactgcagtaagcatgcagccaccagctcgggaggagatcacttg
tttgccaagccttctctcctgccaccttctaaaacaggaaagccttccactaccaaaatt
ttcagctcagcaagttcttcacggaatgcagccttcagcaaggatctggaaggttttaag
aaactatcaccagcttcaaaaagcaaagtgaatgcagcaaaaccagtggtggccaggcca
tcaaatgcaaaggctataccaactggaaatcaaacatgcaagtctccaagtttcagtaat
gtacctcaaccttctgtttctagaaatgtcctccagccgcaaaatagacagaatgacaac
gcttcaaatatttacagcagacctgcccgagaagcatattattcttccttttctggcgtt
cagcagcgtgatcacagtatctttgttaatgcagtcctaaagtggacttacgaaatgttt
gtgagctccagccagtttggacctccaagcagcctcctgcactccttagtagcctctgtt
cctgtccaatttcatggatacaatgactattttaatacgttcttccccttgatgatgcta
aatgcctttgaaacactggcacaagagtggctagaaaaggagagaggaagagagaagaat
tactacttctacttacagaacttcagtgctgacttgaatacagcagattttacagctcat
tttcaagaaggtgatttggcaaagcagcttcatccaaaggaggacgacttaatctttttg
gtggtccaaaagaagaaagacgcctttggagaagaaagtgagatggagaaccatatagtg
aatcacgttggtcttgtgacacgattttctcgtgcatctggctgtttaactagacaaagg
gagcagcataccgtctgtcatctttctgtgcaaactcgaggcaatttgtcattcttcata
aataagcaagtgaagtgtgtggtggttggctccctggtgaccacacaccgaactttcaaa
ggtctactactattgagcaggagtcccctggctaaacccatcataaatccaagttacagt
gacttctgtcccagagatttcaccacagcttcagaaagcgctgcatcggatgtgaatgaa
tacaatgaaggtcaaaagagagccattgagacagcttatgccatgataaagcaacatcca
gggcttcccaagatctgcctcatccacggaccacctggaacagggaaatcaaaaactatt
gttggacttctgtctcgtgttttgagagaaaacactaggaatgagaaagcaactcaaaaa
acaaattccaagatcaagccaaaccgttttctagtttgtgcaccatcaaatgctgctgta
gatgaactcatgaaaaagatcatcgttgcatttaaggaaaaatgccaaaacaaacaggag
cctttgggaaattgtggtgatatcaaactagtgcgacttggtgctgaaaaggcaatcaac
agtgaagtccggggatttagcctggataagcaagttgaacatagaatgaaacgaatgcca
tctgactatgaccaggatattcagaaaaaaaaagcagctctggatcaaaagctggacatg
ctgtctcgtcagcgtgccatgcacagatgtgagaagagggagagtcaaatgttagatgat
gaaattgccagactttcaaaggagagacagcagcttgcttctcaactaaaggaggttcgg
gggcactctcagaaagtacagacggctatcatcttggagtccgacatcatctgctgcaca
ctgagcacaagcggaggaagtctgctggaatctgctttttggcggcaaggacttgatcct
ttcagctgtgtcattgtggatgaggcagggcagtcctgtgaagttgaaacactgattcca
ctgatccatcgctgtaataaactggtccttgttggagatcccaaacagcttcctcctact
gtaaagtcaataaaagctcaggaatacgggtacgatcagtccttgatggcacgtctgcac
aggcacctggaggagcaagtgcagaagaatgttttacgaagcctgccagttgtgcagctg
acactgcagtacaggatgcaccctgacatctgcctcttcccatccaattatatttatggc
aggactctaaagactgacaaagcaacagaagagaacagatgttcttcagagtggccattc
cagccctaccttatttttgatgtaggagatggtcgtgaggagcgagacaatgactctttt
agtaatcctcaggaagtgaagctggtgatggaattaattagaacaattaaagaaaaaagg
aaagatctgggtcttcgtcgcattggaataattaccccttacagtgcacaaaaaaagaaa
atccaagatcaactggacagagtgtttaagaataacagcccaggagaagtagacacagtg
gatgcattccagggacgagagaaagactgcatcatagtgacgtgtgtccgggcaaacaac
actaaagggtcaattgggtttctggcgagtcttcagcgtctgaacgttacaattacccga
gccagatacagcctcttcatccttggaagactgaaaacgctcatggacaataaggactgg
aatgggttgattcaggatgctcagaaaagaggtgccattatcaagacatcagaaaaaagc
tacaggaatgatgctcttaagatcttgaagcttaagccaacagtaccgctcccagccaac
gcagggacaaagaaacctccactcttgcaggcttgttcttccagcagcaagatggatgag
cttgcaaatccaagggaggccagcagcccgcgggatgtccctgctgacgctggccatgca
gtgccccaaggaagcagaaggccccagcagcccccaggggctcaggctgcagactccagg
agaggcagtgcccctgcacccgtggaggcaccggcgcttcctgccgatcgagagaaacca
cgggacccaagactggcaagtatggctagtagaactgaaacaaaagggaaggagcaggcc
tcaaaaggcagcagtcggacagcccagagcaatccaggatcaacgtcacagcaaggcctc
cgtgtgtcctcatctgccagggatcggatttccagaacagaaacttctaagcagccccac
caaacaatgggacaacgtgacatgccttccacgtcaccttacgcagctcggcacgagggt
gaccggagagcttctgtattgaaaagcggttcaaaagcctacagcgaaggaggtcaaagc
aatagcagtaagtgggacaaagactatcgtgttttaacaaggagaacatcagaggaatcg
ctagagaacagagactcaaacggtgccaagcgaagaaagacctttcactga
DBGET
integrated database retrieval system
