Rana temporaria (common frog): 120913284
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Entry
120913284 CDS
T07929
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03013
Nucleocytoplasmic transport
rtem03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120913284 (UPF1)
03015 mRNA surveillance pathway
120913284 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtem03019
]
120913284 (UPF1)
Enzymes [BR:
rtem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120913284 (UPF1)
5.6.2.5 RNA 5'-3' helicase
120913284 (UPF1)
Messenger RNA biogenesis [BR:
rtem03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120913284 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
120913284 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
120913284
NCBI-ProteinID:
XP_040179067
LinkDB
All DBs
Position
1:complement(399936312..400034688)
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AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDGQVNG
PEGILQNGTVDDGVGKTSQLLGELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSG
YIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFL
ALHNQIRNMESMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG
AGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQW
PQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKL
VNTINPGARFMTTAMYDAREAIIPGSVYDRSSQARPSNMYFQTHDQIGMISSGPSHVPAM
NIPIPFNLVMPPMPPPGYFGQANGPTAGRGMPKGKATRGGRQKQRGIGLQGMSQGNMPNS
QASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagaccctcacattccttgacaccgaggag
gccgagctgctcggggccgacactcagggctctgagttcgagtttaccgactttaccctg
cccagccaaactcagacccaagggcagactcagagccagctggacggacaggtcaatggt
cctgaggggatactacagaatggcacagtagatgatggggtgggaaaaacaagccagtta
ctgggcgagctaaattttgaagaagatgaagaagatacatattatacaaaagatctccct
ttacatgcttgcagctactgtggtattcatgatcctgcttgtgtggtctactgtaacaca
agtaaaaagtggttctgtaatggacgtggaaacacttctggaagccacattgtaaaccat
ctggtcagagcaaagtgtaaagaagttactttgcacaaggatggacctctgggagaaacc
gtgttggaatgctacaactgtggttgcagaaatgtttttcttcttggatttatccccgca
aaagcggattcagtggttgtgttgctgtgcaggcagccctgtgctagtcaaagcagcttg
aaggatattaactgggatagctctcagtggcagccgcttatacaagatcggtgtttcctc
tcctggctggtgaaaatcccatctgaacaagagcagctgagagcacgccaaattacagct
cagcaaataaacaagctagaggagctctggaaggaaaacccttctgcaaccctagaggat
ctggaaaaacctggcgttgatgaagagcctcagcacgttctccttagatatgaggatgct
tatcagtaccaaaatatatttggaccacttgtgaaacttgaggccgattatgacaaaaag
ctgaaggagtcccagactcaagataacattacagttcgatgggaccttggccttaacaag
aaaagaattgcttacttcactttgccaaaaacggattctgacatgcgtttaatgcaaggg
gatgaaatatgtttgcggtacaaaggtgaccttgcaccgttgtggaaaggcattggacat
gtaataaaggtcccagacaattatggtgatgaaattgccattgaattgagaagcagcgtt
ggagcaccagtggaagttactcacaattttcaggtggattttgtttggaagtcaacatct
tttgacagaatgcagagtgctttaaagacctttgctgttgatgaaacgtcagtttcgggg
tacatatatcataagctgcttggccacgaggtggaagatgtgattatcaaatgccagctc
cccaagagatttacagcacaaggactcccagatctgaaccactcgcaggtttatgcagtg
aagactgttctgcaacgccctcttagtcttattcaaggtcctcctggtactggaaagacg
gtaacatctgctacaattgtgtaccaccttgctagacagggaaatggcccggtcttggtc
tgtgccccaagcaacattgctgtggatcagctgacagagaagattcatcagactggtctc
aaagttgttcggctttgcgcaaaaagtcgtgaagcaattgattctccagtttctttcttg
gcattgcataatcaaattcgtaatatggaaagcatgccagagctacaaaagttgcaacag
cttaaagatgagactggggaactttcatctgctgatgagaaacgataccgagcccttaaa
agaacagctgaaagagaactgcttatgaatgcagatgtgatttgctgtacctgtgtgggt
gctggtgatcctaggcttgcaaaaatgcagttccgctcaattctgattgatgaaagtact
caagccacagagccagaatgcatggtgccagttgttctcggcgcaaagcagcttattttg
gtgggagatcattgtcagcttggacccgttgtgatgtgtaaaaaagctgctaaggctggc
ctgtcccagtcgttgtttgagagacttgtggttctgggaatcagaccaattcgcctgcag
gttcagtatcgaatgcaccctgcactgagtgcatttccgtcaaacatcttctatgaaggc
tccctccagaatggtgtcactgcagcggaccgtgtgaagaaaggttttgacttccaatgg
ccacagccagacaagcccatgtttttttatgtaactcagggacaggaagaaattgcaagt
tcaggcacttcctatttgaataggactgaagctgctaatgtggagaaaatcaccacaaaa
cttctgaaggcgggggccaagccggatcagatagggataattactccatatgaaggccag
aggtcctacttagtgcagtacatgcaattcagtggctccttgcatactaaactatatcag
gaagtggaaattgccagtgttgatgcatttcaaggtcgagagaaggactttatcattctg
tcctgtgtaagagcgaatgagcaccagggcattggatttttaaatgatccccgtcgtctg
aatgtggctttgaccagagcaaggtatggtgtaattattgtgggcaacccaaaagcatta
tcaaagcagcctctatggaatcatctattaaattattacaaagagcagaaagtgctagtg
gaaggacctctgaacaatctccgggagagtctcatgcagttcagtaaaccacgcaaactt
gtaaacaccattaatcctggtgcacgctttatgacaactgccatgtatgatgctcgagaa
gctataattcctgggtctgtttatgatcgaagcagtcaagctcgaccctcaaacatgtat
tttcagacgcatgatcagataggcatgatcagttcgggacccagccatgtacctgccatg
aacattcctataccgttcaatctggtcatgcctccaatgcctccaccgggctactttggt
caagccaatggaccaactgcaggtcggggtatgcctaaaggaaaggcaacccgtggtggg
cgccagaaacagagaggcatagggcttcaaggcatgagccagggaaacatgcccaacagc
caagccagtcaggatgttgtatctcagccgttctctcaaggccctctaacacagggttat
atatccatgagccagccttcgcaaatgagtcagccaggactctcccagccagaattatcg
caggatagctaccttggtgatgaatttaagtcccaaattgatgttgcgttatcgcaggat
tctacttaccagggtgaacgtgcatatcaacatggaggtgtgactgggctgtcacagtac
taa
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