Rana temporaria (common frog): 120915232
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Entry
120915232 CDS
T07929
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03030
DNA replication
rtem03410
Base excision repair
rtem03420
Nucleotide excision repair
rtem03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120915232 (LIG1)
03410 Base excision repair
120915232 (LIG1)
03420 Nucleotide excision repair
120915232 (LIG1)
03430 Mismatch repair
120915232 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rtem03032
]
120915232 (LIG1)
03400 DNA repair and recombination proteins [BR:
rtem03400
]
120915232 (LIG1)
Enzymes [BR:
rtem01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120915232 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
120915232 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
120915232 (LIG1)
DNA replication proteins [BR:
rtem03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
120915232 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
120915232 (LIG1)
DNA repair and recombination proteins [BR:
rtem03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
120915232 (LIG1)
NER (nucleotide excision repair)
Other NER factors
120915232 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
120915232 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
120915232
NCBI-ProteinID:
XP_040181500
LinkDB
All DBs
Position
10:complement(80395505..80533853)
Genome browser
AA seq
990 aa
AA seq
DB search
MQRTIKSFFQPKPGGAVKKEEGKTEDHGSQKGKCSTSKNAKEHPLKERNGTAPTDDSASP
VKRIPRKTVRILDSSDDEEAMDVETTKKAKDDVETVQKAKPATPPVSTGGEGTSVRSGGS
SERSANSASPDVSITSNIPKRKTARKQITKRKLENASTEPDKQNQQLNAKEEVAKRQKKE
ADDGKSPIKSGEETEQCTMDTLPENTKEMCKLKAVKKSEVKSEPEEETEQCTMDTSPEKT
EEKNASPPSSKSKKGNKVSEKFFEKKGKASGKKDKKESKKESSEKNVEEESKVSEKLPVK
EESEKSSEQSSANTPAKPTKNISSFFGGSKQDDSDKQADYNPSKSRYHPVNDACWTNGQM
VPYLAVARTFEMIEDESARLKNIETLSNLLRSVICLSPGDLLPCIYLCLNRLGPAYEGLE
LGIGETILMKAVAQATGRQLDKIKAEAQEKGDLGLVAESSRSNQRTMFTPPKLTVLSVFN
KLKEIAKMTGNASMNKKIDVIKGLFVACRYSEARYIARSLGGKLRIGLAELSVLAAIAQA
VCLTPPGQEFPPAVIDASKGMSTEAKKAWVEEHSLILKQTFCELPNYDVVIPALLKHGIK
ELPKHCHLTPGVPLKPMLAHPTKGVTEVLKRFEEAAFTCEYKYDGERAQIHILENGEVHV
YSRNQENNTSKYPDIISRIPKVKKENVKSCIIDSEAVAWDPQKKQIQPFQVLTTRKRKDV
EASEIKVQVCVYAFDMLYLNGESLVREPFSRRRQLLRESFQEVEGEFTFATYMDTSNTDE
ISEFLDQSIKDSCEGLMVKTLEQNATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYF
GKGKRTGKYGGFLLASYDEESEEYQTICKIGTGFTDEDLENHYNFLKDRVIDGPRSYYRW
DSATQPDHWFEPVQVWEVKCADLSISPVHKAAVGLVEDEKGISLRFPRFLRIREDKKPEE
ATNSTQVADLYKKQQQIQNTSAEKGDEDFY
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggactataaagtcattttttcagcccaaaccaggaggggctgtaaagaaagaa
gagggaaaaacagaagatcatggttctcaaaaagggaaatgttctaccagtaaaaatgcc
aaggaacatccattaaaagagagaaatggtacagccccgactgatgattctgcatctcct
gtaaaacgtattccaaggaagactgtacggatattagacagtagtgatgatgaagaggct
atggatgttgaaaccacaaaaaaggcaaaagatgacgttgaaacagttcaaaaggcaaag
ccagctactccaccagtttccactggtggggaaggtacctctgtcagaagtgggggttcc
agtgaaagatcagccaattctgcttcaccagatgtttctataacttccaatattcccaaa
cgcaaaacagctcgcaagcagataaccaaaagaaaattagaaaatgcctcaacagagccc
gataaacaaaatcaacaattaaatgccaaagaagaagttgcgaagcgccaaaagaaagaa
gcagatgatggaaagtctcctattaaatcgggtgaagagacggaacaatgtaccatggac
acattacctgaaaatacaaaagaaatgtgtaagctgaaagctgttaaaaaatctgaagtt
aagtctgaacctgaagaagagactgagcaatgtaccatggacacctcacctgaaaagact
gaagaaaaaaatgcaagcccaccttctagcaaatcaaaaaagggaaacaaagtgtcagaa
aaattcttcgaaaagaagggtaaagcttcaggaaaaaaggataaaaaagaatctaaaaaa
gaaagttctgaaaaaaacgtagaggaagaaagtaaagtctctgaaaaacttcctgtaaaa
gaagagtctgaaaagtcttcggagcagtcctctgctaatactcctgcaaagcccacaaaa
aatatttcaagtttctttggaggcagcaagcaagatgattcggacaaacaggcagattac
aatccatcaaaaagtcgttatcatccagtaaatgatgcctgctggactaatggccagatg
gttccttacttggcagttgcacgcacatttgaaatgatagaagatgaatctgcacgctta
aagaacattgagacacttagcaatttgctgcgttctgttatctgtctgtctccgggggac
cttctaccttgcatctacctgtgtttgaaccgcctgggtcctgcttatgaagggcttgaa
cttggtattggtgaaactatattgatgaaagctgttgcacaagcgactggacgtcagtta
gacaaaattaaagcggaggcacaagagaagggtgatctcggacttgttgcagaaagcagc
cgcagtaaccagcgcaccatgttcacacccccaaaacttaccgttttgagtgtctttaat
aagctcaaagagattgccaagatgactggtaatgcttcgatgaataagaagattgatgtc
attaaaggcttgtttgttgcgtgcagatattctgaagcacgttacattgctagatcttta
ggaggaaaacttcgaataggattagcagagctatctgttttggcagccatcgcacaagcc
gtgtgccttacgccaccaggccaagagtttcctccagctgtgatagatgcttcgaaggga
atgagcacagaggctaaaaaagcatgggttgaggagcattctttgatcctgaaacagacg
ttctgtgagttaccaaactatgatgtggtcatcccagctcttctgaagcatggaattaaa
gagcttcccaaacattgccaccttactccaggagtcccattaaagccgatgttggcacac
ccaaccaagggagttacagaagtgctgaagaggtttgaagaagctgcttttacctgtgaa
tataagtatgatggagagcgtgcacagatacatatcctggagaatggagaagtacacgta
tatagcagaaatcaggaaaacaatacatcaaaatatcctgacataatcagcagaatccct
aaggttaaaaaagaaaatgtgaagtcttgcatcattgattcagaagctgttgcatgggat
ccacagaaaaagcagattcaacctttccaagtactcactactagaaaacgaaaggatgtg
gaagcttcagaaataaaagtccaagtgtgcgtgtatgcttttgacatgttgtatttaaat
ggagagtctctggttagagaaccattttcaagaagacgccagctactaagagagtctttt
caggaggtggaaggagaattcacgtttgctacatatatggacacatcaaacacagatgaa
atttcagagtttcttgatcagtcaattaaagattcttgtgaaggtctgatggtaaaaact
ctagaacagaatgccacatatgaaattgcaaagcgttctcacaactggttaaagctaaag
aaagattacttggatggtgtaggagacactttggatctggttgttattggtgcttatttc
gggaaaggaaagcgaactggaaaatatggaggctttttgctggcatcatatgatgaagag
agtgaagaatatcaaaccatatgcaagattggaacagggtttacagatgaggatctggaa
aaccactacaatttcctaaaggacagggtcattgatggaccacgcagttactaccgatgg
gacagtgcaacacagccagaccattggtttgagcctgtgcaagtttgggaagtgaaatgt
gcagatctttcaatctctccagttcataaagctgcagtgggactggtggaagatgaaaag
ggaatttcactacgtttcccacgtttcctccgaattcgagaagataaaaaaccagaagag
gcaacaaatagtactcaggttgctgacctttataagaaacaacaacaaatacagaacaca
tctgcagagaaaggagatgaggatttctattag
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