Rana temporaria (common frog): 120917926
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Entry
120917926 CDS
T07929
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120917926 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtem03041
]
120917926 (DHX38)
Enzymes [BR:
rtem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120917926 (DHX38)
Spliceosome [BR:
rtem03041
]
Complex C
Other components
Step II factors
120917926 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
SLFN-g3_helicase
T2SSE
Flavi_DEAD
nSTAND3
SRP54
AAA_7
AAA_16
AAA_30
Motif
Other DBs
NCBI-GeneID:
120917926
NCBI-ProteinID:
XP_040185476
LinkDB
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Position
11:158383679..158421158
Genome browser
AA seq
1230 aa
AA seq
DB search
MEDEASLHRLEGSEPSLEEGGLVIKKKSSSNEPHVFKAPAPRSSLLGLDLLAAQKRKERE
EKERQEGDKKTKGGSKDWEEREKEKSPEGSSDRISREKEGSSDRISRGSHGDRHYRAPRV
ETPTYTGGVNEEFLARSRQRERERREHGVYASSKDDRRRKERSSRDRDDRSHRSSRSERD
RSERDGGSERSSRRGEPDSPRHKARDSSSPSRSGWEEDDSGYGSSQRSHWESPSPSPSSK
DYDRSHRSERDSSRKDRSVRVSYTDDTPLPTPSYKFNEWASERRHFGSTPRLSQGKGKQD
GDEDGIRFTTDDDQRQWEEDQRQADRDWYMMDEGFDEFRNALTNTSEDYVRKREQLLQKQ
APKRVSAQRRQINEDNERWETNRMLTSGVVQRLEVDEDFEEDNAAKVHLLVHNLVPPFLD
GRIVFTKQPEPIIPVRDPTSDMAIISRKGSQLVRKHREQKERKKAQHKHWELAGTKLGDI
MGVKKQEEEKEKPMAEDGSVDYRTEQKFADHMKERNEASSDFSKKKTLMEQRQFLPIFAV
RQELLTVIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIACTQPRRVAAMSVAKRV
SEEMNVSLGEDVGYAIRFEDCTSEKTLIKYMTDGILLRESLREADLDHYSAVIMDEAHER
SLNTDVLFGLLREVVTRRSDLKLIVTSATMDADKFANFFGNVPIFYIPGRTFPVDILFSK
TPQEDYVEAAVKQALQIHLSGSPGDILIFMPGQEDIEVTSDQIIERLEELESAPLLAVLP
IYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGM
DALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLCTTVPEIQRTNLSNVVLL
LKSLGVQDLLLFHFMDPPPEDNMLNSMYQLWILGALDNTGSLTSTGRLMVEFPLDPALSK
MLIVSCDMRCSAEILIVVSMLSVPAIFYRPKGREEESDQVREKFAVPESDHLTYLNVFLQ
WKNNNYSRGWCNQHFIHAKAMRKVREVRAQLKDIMVSQRMSLSSCGSDWDVVRKCICAAY
FHQAARLKGIGEYVNVRTGMPCHLHPTSSLFGMGFTPDYIVYHELVMTTKEYMQCVTSVD
GEWLAELGPMFYSIKHAGKSRQENKRRAKEEVSAMEEEMIMAEEQLRTRREEQDKKSTLG
STRSVKIYTPGRKEQMDPGTPRRTPARFGL
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgaagcctcgctgcacaggctggagggcagtgagccttctctggaggaagga
ggactggtgattaagaagaagagctccagcaacgagccgcacgtgtttaaagcccccgcg
ccgcgctcctcgctgctgggcctggacttgttggccgctcagaaaaggaaggagcgagag
gagaaggagcgtcaggagggggacaagaaaacgaaaggcggttctaaagactgggaggaa
cgagagaaggagaagtctcccgaaggatccagtgacaggatcagccgggaaaaggaagga
tccagtgacaggatcagccggggaagccatggcgatagacattacagagcgccacgtgtg
gagacgccgacttataccgggggggtaaacgaggagttcctggctcggagtcggcagagg
gaacgggagaggagggaacatggcgtctatgcttcatcgaaggatgatcggcggcggaag
gagcgcagcagtcgagacagagatgaccgcagtcacaggagcagcaggtctgaacgtgat
cgatccgagcgggacggtggatcagagagaagttcaagacgtggtgaacctgactctccg
aggcacaaggccagagattcctcgagtccctctcgttctgggtgggaggaggatgacagc
ggctatggcagttctcagcgctctcactgggagtcaccttccccgtcgccatcatccaaa
gactatgaccggagccaccgcagtgagagggacagttccagaaaagatcggtcagtgagg
gtcagctacacggatgatactccgctaccgacaccatcctacaagttcaatgaatgggct
tctgagaggcgccattttgggtccaccccacggctctcccagggcaagggaaaacaggac
ggtgatgaagatgggattcgttttacaacagatgatgaccagagacaatgggaggaagac
cagaggcaagctgatcgagattggtacatgatggatgagggttttgatgaatttcgcaac
gctctgactaacacctctgaggactatgtacgcaagagggaacagctgcttcaaaaacag
gcgcccaagagggtttctgctcagagacggcagatcaatgaggacaacgagcggtgggaa
acgaaccgcatgctgacgagtggggtggttcagaggttggaagtggatgaggactttgaa
gaggacaatgccgccaaagtgcatctgctggtccataacttggtgcccccttttctcgat
ggcagaattgtctttactaagcagcctgagccaattattccagtgcgggatccaacttct
gacatggcaatcatctcacgcaaaggcagccagctggtgcgcaagcatcgcgagcagaag
gaaagaaaaaaggctcagcacaagcactgggaattggctgggaccaaactgggagatatt
atgggagtgaaaaagcaggaggaggagaaagagaagccgatggctgaagacggctctgta
gattacaggacggagcaaaagtttgcagatcacatgaaagagcgcaatgaggcgagtagt
gacttttccaagaagaagacgctgatggagcagcggcagtttctgcccatctttgctgtt
cggcaggaactgctgaccgtaatcagagataacagtatagtcattgtagttggagaaacg
ggcagtggcaagacaacacagctgacccaatacttgcatgaggacggctacacagattat
ggcatgatcgcttgcacgcagccccgtagagtggccgccatgtctgtggcaaagcgagta
agcgaagagatgaacgtgagtctgggggaagacgtcggctatgctattcggtttgaggat
tgtacatcggagaagaccctcattaaatacatgactgatggtatcttgctgagagaatct
ctgcgtgaagctgacctggaccactacagcgccgttatcatggacgaggcccacgagcgc
tcgcttaacacagacgtactgtttggccttctgagggaggttgtcacccggcggtcggat
ctgaaattgatcgttacctcagccacaatggacgctgataaatttgccaattttttcggt
aatgtccccattttctatattcctgggaggacgtttcctgtggacatcctgttcagcaag
acaccacaggaggattatgtggaggctgctgtaaaacaagcactgcagatccatctttct
ggatctccgggagacatattgatcttcatgcctggtcaggaggacattgaggtgacctcg
gatcagattattgagcgactggaagagctggagagcgcccctcttctggctgtgctgcca
atctactcccagcttccctctgatctccaagccaaaatcttccagaaggctccggatggc
gttaggaaatgcattgtggccactaacattgcagaaacttccctgactgtggatggtata
atgtttgttatagattctggatactgcaagttaaaggtatttaacccacgcattggcatg
gatgctttacaaatttatcctatcagccaggccaatgcaaaccagcgctcgggtagagct
ggcagaacgggtccagggcagtgcttcaggctgtacacgcagagcgcctacaagaatgag
ttgctgtgcactacagtgcccgagatccagcgaaccaacctgtccaatgtggtcctgctg
ctgaagtccctgggagtacaagatcttctcctcttccactttatggacccaccgccagag
gacaacatgctcaactccatgtaccagctgtggattctgggggccctggataacactggc
tcgctcacttccactggacgtctcatggtcgagttcccgctggatccagctctatccaag
atgttgatcgtatcgtgtgatatgcgctgcagtgctgaaatccttattgtggtgtccatg
ttgtctgtgccagccatattttaccgaccaaagggacgtgaggaagaaagcgaccaagtc
agagagaaatttgctgtccctgagagtgaccacttgacctatctgaacgtattcctccaa
tggaagaacaataactactctcgtggctggtgcaaccagcattttattcatgcgaaggcc
atgaggaaggtacgggaagttcgggcccaactaaaggacatcatggtgtctcagcgcatg
tctctctcatcctgtggatcggactgggatgtggtccggaaatgtatctgtgcggcttat
ttccatcaggctgccaggctaaagggaatcggtgaatatgtaaatgtacggacggggatg
ccctgtcaccttcacccaaccagctccctgtttggtatgggattcacaccggactatatt
gtttaccacgagttggtgatgacgaccaaggaatacatgcaatgcgtcacgtcggtggat
ggagagtggctggcggagctcggtcccatgttctacagtataaagcatgctgggaagtcc
agacaggagaacaaacgcagggccaaggaagaggtgtcggccatggaggaagaaatgata
atggcggaagaacaacttcgaacgaggagagaggagcaggacaagaaaagcacactcggc
agtaccaggtctgtgaagatctacacaccggggaggaaagagcagatggatccggggacc
cctcgccgcacccccgcacggtttggcctgtga
DBGET
integrated database retrieval system
